View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-Insertion-6 (Length: 431)
Name: NF0440-Insertion-6
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-Insertion-6 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 105 - 431
Target Start/End: Complemental strand, 36091058 - 36090733
Alignment:
| Q |
105 |
tttttctttatgtagttaacaacaactacaggatgcatcaatatatttagagtgcaatgttgcacaatgagatgcacaacaaatacaaaccacgttgtta |
204 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36091058 |
tttttctatatgtagttaacaacaactagaggatgcatcaatatatttagagtgcaatgttgcacaatgagatgcacaacaaatacaaaccacattgtta |
36090959 |
T |
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| Q |
205 |
ctataccacgtaaactatgaggattttgnnnnnnnctcttgacaactataacaattgtcttgtctgtttcaacaacaacatcacaatctcccattcaaaa |
304 |
Q |
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| T |
36090958 |
ctataccacgtaaactatgaggattttgtttttt-ctcttgacaactataacagttgtcttgtctgtttctacaacaacatcacaatctcccatttaaaa |
36090860 |
T |
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| Q |
305 |
ttttctcacttgtttttctaattattctcaatcttggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaac |
404 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
36090859 |
ttttctcacttgtttttctcattattctcaatctttgaattcccatgtttctgacatcatttacactcaaaacaacacctcattcttaaccatcttcaac |
36090760 |
T |
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| Q |
405 |
atgaaaatacacaacaagagattcaaa |
431 |
Q |
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||||||||||| |||||||||||||| |
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| T |
36090759 |
atgaaaatacattacaagagattcaaa |
36090733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 36091567 - 36091466
Alignment:
| Q |
8 |
ggaaggtggggacaaaaagatgaaaatcatgagataatgggtgagcggcatacatgccacagtgtatcggcctggcacttattcgctttaaatagcattt |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
36091567 |
ggaaggtggggacaaaaagatggaaatcatgagataatgggtaagcggcatacatgccacagtgtatcggcctggcactttctctctttaaatagcattt |
36091468 |
T |
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| Q |
108 |
tt |
109 |
Q |
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|| |
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| T |
36091467 |
tt |
36091466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 427
Target Start/End: Original strand, 36100159 - 36100340
Alignment:
| Q |
240 |
ctcttgacaactataacaattgtcttgtctgtttcaacaacaacatcacaatctcccattcaaaattttctcacttgtttttctaattattctcaatctt |
339 |
Q |
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||||||||||| |||||||| || |||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||| | ||||||||||||||| |
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| T |
36100159 |
ctcttgacaaccttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgtttttatcattattctcaatctt |
36100258 |
T |
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| Q |
340 |
ggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaacatgaaaatacacaacaagagatt |
427 |
Q |
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| T |
36100259 |
ttaattc------atctgacattatttacggtccaaaaaacccctcattctcaaccatcctaaatatgaaaatacataacaagagatt |
36100340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 427
Target Start/End: Original strand, 21482164 - 21482334
Alignment:
| Q |
248 |
aactataacaattgtcttgtctgtttcaacaacaacatcacaatctcccattcaaaattttctcacttgtttttctaattattctcaatcttggaattcc |
347 |
Q |
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|||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||| ||| |||||| ||||||| ||||||| |
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| T |
21482164 |
aactttaacaattgtcatgtctatttcaacaacaacatcacaatcaccctttcaaaattttctcaattgcttttct---------caatctttgaattcc |
21482254 |
T |
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| Q |
348 |
cctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaacatgaaaatacacaacaagagatt |
427 |
Q |
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| T |
21482255 |
tctatctctgatatcatttacactccaaacaatatctcattctcaaccatcctcaacatgaaaatacaaaacaagagatt |
21482334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 34972199 - 34972138
Alignment:
| Q |
274 |
caacaacaacatcacaatctcccattcaaaattttctcacttgtttttctaattattctcaa |
335 |
Q |
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||||||||||||||||||| ||||||||||||||||| | ||||||||| || |||||||| |
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| T |
34972199 |
caacaacaacatcacaatcacccattcaaaattttcttaactgtttttctcataattctcaa |
34972138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 36107321 - 36107356
Alignment:
| Q |
134 |
aggatgcatcaatatatttagagtgcaatgttgcac |
169 |
Q |
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| T |
36107321 |
aggatgcatcaatatatatagagtgcaatgttgcac |
36107356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 36107554 - 36107599
Alignment:
| Q |
382 |
cctcattcttaaccatcctcaacatgaaaatacacaacaagagatt |
427 |
Q |
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| T |
36107554 |
cctcattctcaactatcctcaacatgaaaatacaaaataagagatt |
36107599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 427
Target Start/End: Original strand, 8338046 - 8338224
Alignment:
| Q |
240 |
ctcttgacaactataacaattgtcttgtctgtttcaacaacaacatcacaatctcccattcaaaattttctcacttgtttttctaattattctcaatctt |
339 |
Q |
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||||||||||| |||||||| | ||||| |||||||||||||||||||||| ||||| ||| |||||||| |||||||||| ||| ||| |
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| T |
8338046 |
ctcttgacaaccttaacaatttttatgtctatttcaacaacaacatcacaatcatccatttaaacttttctcaattgtttttct---------caaactt |
8338136 |
T |
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| Q |
340 |
ggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaacatgaaaatacacaacaagagatt |
427 |
Q |
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| T |
8338137 |
caaattcccctatctctgaagtcatttacacaccaaacaacacctcattctcaaccatcctaaacatgaaaatacataacaagagatt |
8338224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 6838311 - 6838360
Alignment:
| Q |
378 |
aacacctcattcttaaccatcctcaacatgaaaatacacaacaagagatt |
427 |
Q |
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||||||||||||| ||| ||||||||||| |||||||| || |||||||| |
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| T |
6838311 |
aacacctcattctcaactatcctcaacataaaaatacaaaataagagatt |
6838360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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