View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-Insertion-8 (Length: 304)

Name: NF0440-Insertion-8
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-Insertion-8
NF0440-Insertion-8
[»] chr3 (1 HSPs)
chr3 (15-304)||(53267853-53268142)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 53267853 - 53268142
Alignment:
Q  15 cttccattgaacatattataaatttgatatgatgctcactagacacgtaaacatatttatttgatccaatcgttgagtttgttatttcagttctaattta 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53267853 cttccattgaacacattataaatttgatatgatgctcactagacacgtaaacatatttatttgatccaatcgttgagtttgttatttcagttctaattta 53267952  T
Q  115 atcgaagatttttctaaacacatttgttgttatactatctgatcctttggttcactgcatttgtggcctccaagaatattgatcaccaggcttcactaag 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53267953 atcgaagatttttctaaacacatttgttgctatactatctgatcctttggttcactgcatttgtggcctccaagaatattgatcactaggcttcactaag 53268052  T
Q  215 cttcggagttcattgtttaaaccttgtggatatggctttgttggtaagaaaattttcttggtaaaaaactaaacgtagataagacttgca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53268053 cttcggagttcattgtttaaaccttgtggatatggctttgttggtaagaaaattttcttggtaaaacactaaacgtagataagacttgca 53268142  T

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