View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_high_7 (Length: 451)
Name: NF0440_1D_high_7
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 40735831 - 40736247
Alignment:
| Q |
20 |
caccgggttatttagcttaacaccatgtccaactgcaaatgtnnnnnnn--ggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaa |
117 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40735831 |
caccgtgttatttagcttaa-accatgtccaactgcaaatgtaaaaaaaaaggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaa |
40735929 |
T |
|
| Q |
118 |
atgaaaatgaatatgtcatagtcatataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40735930 |
atgaaaatgaatatgtcatagtcatataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacactcctacatcaagtatctg |
40736029 |
T |
|
| Q |
218 |
aaatttgcagcgatgagatgatatgagcgaatcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaaca |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40736030 |
aaatttgcagcgatgagatgat--gagcgaatcattctcaatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaaca |
40736127 |
T |
|
| Q |
318 |
taaccttgaattcaattcaatttgataaccctaatctctgaacaacaaagacacgggtttgctttgttaaaagattttttagtaaacaaattttttaaac |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
40736128 |
taaccttgaattgaattcaatttgataaccctaatctctgaacaacaaagacacgggtttgccttgttaaaagattttttagtaaacaaatttttgaaac |
40736227 |
T |
|
| Q |
418 |
ttctctttaaatactctctt |
437 |
Q |
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|||||||||||||||||||| |
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| T |
40736228 |
ttctctttaaatactctctt |
40736247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 37469928 - 37469779
Alignment:
| Q |
69 |
ggtgagaaaagattagcacgataaatcttaatatgattttgtttagaaaatgaaaatgaatatgtcatagtcatataacctcctccttcgataactctga |
168 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | | |||| |||||||| |||||||||||| |
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| T |
37469928 |
ggtgagaaaagattaccaagataaatcttaatatgattttgtttagaaaatgaaaatgaaaaagggtga---atat-acctcctctgtcgataactctgg |
37469833 |
T |
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| Q |
169 |
aaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctgaaatt |
222 |
Q |
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||| ||| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
37469832 |
aaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaatt |
37469779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 37469674 - 37469588
Alignment:
| Q |
249 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacataaccttgaattcaattc |
335 |
Q |
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| T |
37469674 |
tcattctggaggatgaaggaagcctcatactgtaggcgagattcattctggaggaagcgttgattaacataaccttgaatttaattc |
37469588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 37469708 - 37469664
Alignment:
| Q |
257 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
301 |
Q |
| |
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| T |
37469708 |
gatgatgagcgaagcctcgcgccattggagagattcattctggag |
37469664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 33004085 - 33004154
Alignment:
| Q |
249 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
318 |
Q |
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| T |
33004085 |
tcattctggaagatgaaggaagcctcaagccattggagagattcattctggaggaagcattgattaacat |
33004154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 17594991 - 17595049
Alignment:
| Q |
260 |
gatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
318 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
17594991 |
gatgaaggaagcgtcacgccatacgagagattcatcttggaggaagcgttgattaacat |
17595049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 17594946 - 17594990
Alignment:
| Q |
257 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
301 |
Q |
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| T |
17594946 |
gatgatgagcgaagcctcacgccattggagagactcatactggag |
17594990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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