View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_1D_low_11 (Length: 430)

Name: NF0440_1D_low_11
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_1D_low_11
NF0440_1D_low_11
[»] chr4 (2 HSPs)
chr4 (23-247)||(50420188-50420412)
chr4 (278-416)||(50420443-50420581)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 50420188 - 50420412
Alignment:
Q  23 aatgtgttagtgttgtatatgttttccctgtcaatgcttcatagctcacaacatgagaacaaagtttgaagaatccatcaaatttgtaaaccatcaataa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50420188 aatgtgttagtgttgtatatgttttccctgtcaatgcttcatagctcacaacatgagaacaaagtttgaagaatccatcaaatttgtaaaccatcaataa 50420287  T
Q  123 atttaggtcaattatggaagttccatttttaggctatgtggttgaggccacaaattctcttaagatgaaatgatgcatggaatgaccaagtgttacattt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50420288 atttaggtcaattatggaagttccatttttaggctatgtggttgaggccacaaattctcttaagatgaaatgatgcatggaatgaccaagtgttacattt 50420387  T
Q  223 gtctcattttatcaaaataggatgg 247  Q
    |||||||||||||||||||| ||||    
T  50420388 gtctcattttatcaaaatagaatgg 50420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 50420443 - 50420581
Alignment:
Q  278 tcctttttgaaggctgacacggatggattactttgaataggacattaattttacatctcttacattttctctttttgctcctgttacattaccatcatca 377  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50420443 tcctttttgaaggctgacacggatggattactttgaattggacattaattttacatctcttacattttctctttttgctcctgttacattaccatcatca 50420542  T
Q  378 tagatctataacttttctgtcttttctttatggcttcat 416  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50420543 tagatctataacttttctgtcttttctttatggcttcat 50420581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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