View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_14 (Length: 348)
Name: NF0440_1D_low_14
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_14 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 7167897 - 7168225
Alignment:
| Q |
1 |
aatatcataaaatgattttgaataaatattcatttgaataaaattacattgttggctattgaacctggcacttcctcgtaaaggattcaaagtcagaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167897 |
aatatcataaaatgattttgaataaatattcatttgaataaaattacattgttggctattgaacctggcacttcctcgtaaaggattcaaagtcagaacg |
7167996 |
T |
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| Q |
101 |
aaagcgccattaaataatgaaatccaacctaagtatagaaaacagtgataaaataatcgaaaaacaacagaaaattcagtgaaagaggaagagaggaaac |
200 |
Q |
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| T |
7167997 |
aaagcgccattaaataatgaaatccaacttaagtatagaaaacagtgataaaataatcgaaaaacaacagaaaattcagtgaaagaggaagagaggaaac |
7168096 |
T |
|
| Q |
201 |
atattaacgttctaactatagatgaagaaactgcatgttgcttcagacatcccaacaacacgcggttttgcagcatacatcataaaattgtgtagcagtc |
300 |
Q |
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| T |
7168097 |
atattaccgttctaactatagacgaagaaactgcatgttgcttcagacatcccaacaacacgcggttttgcagcatacatcataaaattgtgtagcagtc |
7168196 |
T |
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| Q |
301 |
gtcaaacattttaacatacacacaagtga |
329 |
Q |
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| T |
7168197 |
gtcaaacattttaacataaacacaagtga |
7168225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 7173704 - 7173800
Alignment:
| Q |
234 |
catgttgcttcagacatcccaacaacacgcggttttgcagcatacatcat-aaaattgtgtagcagtcgtcaaacattttaacatacacacaagtga |
329 |
Q |
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| T |
7173704 |
catgttgcttcagacatcccaacatcacacggttttgcagcatacatcatcaaatttgtgtagcagccatcaaacattttaagatacatacaagtga |
7173800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 7166999 - 7167095
Alignment:
| Q |
234 |
catgttgcttcagacatcccaacaacacgcggttttgcagcatacatcataaaat-tgtgtagcagtcgtcaaacattttaacatacacacaagtga |
329 |
Q |
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| T |
7166999 |
catgtagcttcagtcatcccagcatcacatagttttgcagcatacatcataaaaaatttgtagcagtcatcaaacattttaacatacacacaagtga |
7167095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 11238368 - 11238300
Alignment:
| Q |
249 |
atcccaacaacacgcggttttgcagcatacatcataaaa-ttgtgtagcagtcgtcaaacattttaaca |
316 |
Q |
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| T |
11238368 |
atcccagcaacaagcggttttgcagcatacatcataaaatttgtgtaacagtcatcaaacattttaaca |
11238300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 7173418 - 7173552
Alignment:
| Q |
19 |
tgaataaatattcatttgaataaaattacattgttggctattgaacctggcacttcctcgtaaaggattcaaagtcagaacgaaagcgccattaaataat |
118 |
Q |
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|||||||||||||||||||||||||| || ||| |||||||||| || ||||||||||| | | |||||| | ||| ||||||| ||||||| || |
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| T |
7173418 |
tgaataaatattcatttgaataaaat--cagtgtaggctattgaaactagcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaac |
7173515 |
T |
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| Q |
119 |
gaaatccaacctaagtatagaaaacagtgataaaata |
155 |
Q |
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| T |
7173516 |
taaatccagcttaagcatagaaaacaacgataaaata |
7173552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 11238681 - 11238629
Alignment:
| Q |
22 |
ataaatattcatttgaataaaattacattgttggctattgaacctggcacttc |
74 |
Q |
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| T |
11238681 |
ataaatattcaattgaataaaattacagtgttggctattgaaccaagcacttc |
11238629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 29527 - 29437
Alignment:
| Q |
239 |
tgcttcagacatcccaacaacacgcggttttgcagcatacatcataaaa-ttgtgtagcagtcgtcaaacattttaacatacacacaagtga |
329 |
Q |
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| T |
29527 |
tgcttcaaacatctcaacaacaggcggttttgcagcatacatcataaaatttgtgtagcagtcgtcaaaca-tttaacatacacacaagtga |
29437 |
T |
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