View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_15 (Length: 347)
Name: NF0440_1D_low_15
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24561646 - 24561509
Alignment:
| Q |
25 |
aaagcaattctcgaaagcaatacacttccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaa |
124 |
Q |
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| T |
24561646 |
aaagccattctcgaaagcaacacactgccaattggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaa |
24561547 |
T |
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| Q |
125 |
tgcttgcactcaactcttcatctttccaatatggaaca |
162 |
Q |
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| T |
24561546 |
tgcttgcacttaactcatcatctttccaatatggaaca |
24561509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 41963746 - 41963684
Alignment:
| Q |
52 |
ccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
114 |
Q |
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||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
41963746 |
ccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
41963684 |
T |
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