View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_18 (Length: 319)
Name: NF0440_1D_low_18
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 4159281 - 4158980
Alignment:
| Q |
9 |
actaggtatatcggattctagctagcgcaagtgcatgattgatgcgcatgtgcatgagtactataaatctcaagatactgagttcgatttctgagtaaaa |
108 |
Q |
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| T |
4159281 |
actagatatatcggattctagctagcgcaagtg----attgatgcgcatgtgcacgagtactataaatctcgagatactgagttcgatttctgagtaaaa |
4159186 |
T |
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| Q |
109 |
aataaagaggctgcttacttgacttgaacttgaaaaggaagaaaaagatgagaaattaaggtatagatcctaagatggatttccttcaaagttatataca |
208 |
Q |
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| T |
4159185 |
aataaagaggctgcttacttga-----acttgaaaaggaagaaaaagatgagaaattaaggtatagatcctaagatggatttccttcaaagttatataca |
4159091 |
T |
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| Q |
209 |
catccaaatcttgctataggaactagctaacatcaagaatttggtaaacacggtcaatttcctgcttagtgtggaaatttcaggatttgtttgtgagtgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159090 |
catccaaatcttgctataggaactagctaacatcaagaatttggtaaacacggtcaatttcctgcttagtgtggaaatttcaggatttgtttgtgagtgt |
4158991 |
T |
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| Q |
309 |
gtgaagggtaa |
319 |
Q |
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| T |
4158990 |
gtgaagggtaa |
4158980 |
T |
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