View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_20 (Length: 302)
Name: NF0440_1D_low_20
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 1742199 - 1742475
Alignment:
| Q |
20 |
atctacacatgcaaggtatttattcgtataatatagaacatagaacaaacaagacatgttatatgtcacattgaaaaatcaaccataaaaatcaacacca |
119 |
Q |
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| T |
1742199 |
atctacacatgcaaggtatttattagtataatatagaacatagaacaaacaagacttgttatatgtcacattgaaaaatcaaccataaaaatcaacacca |
1742298 |
T |
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| Q |
120 |
gaaggtgtgattatttttcttaaggaaggccttgcatgcattagtccacaaacaaaatcaccatccaccaaactgcaattcctcaaatttaactctttca |
219 |
Q |
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| T |
1742299 |
gaaggagtgattatttttctcaaggaaggccttgcatgcattagtccacaaacaaaatcatcatccaccaaactgcaattcctcaaatttaactctttca |
1742398 |
T |
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| Q |
220 |
atgctatgcaattttctattacttcccttactcccttagctgtaacataccaacaattttgaatgtccaataacatt |
296 |
Q |
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| T |
1742399 |
atgctatgcaattttctattacttcccttactcccttagctgtaacataccaacaattttgaatgtccaataacatt |
1742475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 2008150 - 2007867
Alignment:
| Q |
21 |
tctacacatgcaaggtatttattcgtataatatagaacatagaacaaacaagacatgttatatgtcacattgaaa----------aatcaaccataaaaa |
110 |
Q |
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| T |
2008150 |
tctacacatgcaaggtacttattactagaatatataacacataacaaacaatacatgatatatgtcacattgaaattcctctaaaattcagcaataaaaa |
2008051 |
T |
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| Q |
111 |
tcaacaccagaaggtgtgattatttttcttaaggaaggccttgcatgcattagtccacaaacaaaatcaccatccaccaaactgcaattcct-----caa |
205 |
Q |
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| T |
2008050 |
tcaacaccagaaggtgtgattatctttctcaaggaaggccttgtatgtattagttcacaaacaaaatcatcattcagcaaactacaattccttactccca |
2007951 |
T |
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| Q |
206 |
atttaactctttcaatgctatgcaattttctattacttcccttactcccttagctgtaacataccaacaattttgaatgtccaa |
289 |
Q |
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| T |
2007950 |
atttaactcttttaatgctgtacacttttctaatacttcccttactcccttagttgtaacatgccaacaattctgaatgtccaa |
2007867 |
T |
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