View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_23 (Length: 291)
Name: NF0440_1D_low_23
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 43104000 - 43103731
Alignment:
| Q |
22 |
agaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagcttgagaatgttc |
121 |
Q |
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| T |
43104000 |
agaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagcttgagaatgttc |
43103901 |
T |
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| Q |
122 |
tgcttcatattatcaacaaagctaatattggtaaagggaacattgttgctccaaaaattatctcagttgattgcaagatggggaatatctcaattgatgc |
221 |
Q |
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| T |
43103900 |
tgcttcatattatcaacaaagctaatattggtaaagggaacattgttggtccaaaaattatctcagttgattgcaagatggggaatatctcaattgatgc |
43103801 |
T |
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| Q |
222 |
tcataaacatttccctgaagctctatcagttcctaattaattagtaactgaaaattgcttatgatgaaga |
291 |
Q |
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| T |
43103800 |
tcataaacatttccctgaagctctatcagttcctaattaattagtaactgaaaattgcttatgatgaaga |
43103731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 43107220 - 43107017
Alignment:
| Q |
25 |
atgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagcttgagaatgttctgc |
124 |
Q |
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| T |
43107220 |
atgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatgtacatggttggagagatggggaagagtttgagaatgttatgc |
43107121 |
T |
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| Q |
125 |
ttcatattatcaacaaagctaatattggtaaagggaacattgttgctccaaaaattatctcagttgattgcaagatggggaatatctcaattgatgctca |
224 |
Q |
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| T |
43107120 |
ttcatatcatcaaaaaacctaatattggtaaagggaacactgttgatccaaaaattatctctgttgattgcaagttggggacaatttcaattgatgctaa |
43107021 |
T |
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| Q |
225 |
taaa |
228 |
Q |
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| T |
43107020 |
taaa |
43107017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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