View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_26 (Length: 260)
Name: NF0440_1D_low_26
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_26 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 42939403 - 42939160
Alignment:
| Q |
13 |
atcatcagtgatacctacaacaaaacacgtaacaatttgtactgcaaaggaacttaattatttccatgaaataacaactaattagaattgacataggtag |
112 |
Q |
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| T |
42939403 |
atcattagtgatacctacaacaaaacacgtaacaatttgtactgcaaaggaactta----tttccatgaaataacaactaattagaattgacataggtag |
42939308 |
T |
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| Q |
113 |
ctaaaaaatgttgcatggaagaataaaattggtggtgttagtgttttatcaaacggtgtaaaagtacaacgaatatgcctagtgagaagtatacatacag |
212 |
Q |
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| T |
42939307 |
ctaaaaaatgttgcatggaagaataaaattggtggtgttagtgttttatcaaccggtgtaaaagtacaacgaatatgcctagtgagaagtatacatacag |
42939208 |
T |
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| Q |
213 |
aagagagtttgaagagtgagacaaattttttagcaaatgaatttaaca |
260 |
Q |
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| T |
42939207 |
aagagagtttgaagagtgagacaaattttttagcaaatgaatttaaca |
42939160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 9350640 - 9350457
Alignment:
| Q |
76 |
ccatgaaataacaactaattagaattgacataggtagctaaaaaatgttgcatgg-aagaataaaattggtggtgttagtgttttatcaaacggtgtaaa |
174 |
Q |
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| T |
9350640 |
ccatggaatcacaactaatttgaattgacataggtagctaaaaa-tgttgcatgggaagaataaaattggttttgttagtgttttattaagaggtgcaaa |
9350542 |
T |
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| Q |
175 |
agtacaacgaatatgcctagtgagaagtatacatacagaagagagtttgaagagtgagacaaattttttagcaaatgaatttaaca |
260 |
Q |
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| T |
9350541 |
agtacaacagatgtgcctagggagaagtatacatacag-agagagtttgaggtgtgagacaaattatttagcaaataaatttaaca |
9350457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 260
Target Start/End: Complemental strand, 9330981 - 9330808
Alignment:
| Q |
86 |
acaactaattagaattgacataggtagctaaaaaatgttgcatgg-aagaataaaattggtggtgttagtgttttatcaaacggtgtaaaagtacaacga |
184 |
Q |
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| T |
9330981 |
acaactaatttcaattgacatacgtagctaaaaa-tgttgcatgggaagaataaaattggctgtgttagtatttttttaagcggtgcaaaagtacaacag |
9330883 |
T |
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| Q |
185 |
atatgcctagtgagaagtatacatacagaagagagtttgaagagtgagacaaattttttagcaaatgaatttaaca |
260 |
Q |
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| T |
9330882 |
atgtgcttagggagaagtatacataca-aagagagtttgaggagtgagacaatttttttagcaaatgaatttaaca |
9330808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 51054930 - 51054786
Alignment:
| Q |
116 |
aaaaatgttgcatgg-aagaataaaattggtggtgttagtgttttatcaaacggtgtaaaagtacaacgaatatgcctagtgagaagtatacatacagaa |
214 |
Q |
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| T |
51054930 |
aaaaatgttgcatgggaagaataaaattggttgtgttagggttttattaagcggtgcaaaagtacaacgggtgtgaataggaagaagcatacgtacaaaa |
51054831 |
T |
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| Q |
215 |
gagagtttgaagagtgagac-aaattttttagcaaatgaatttaa |
258 |
Q |
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| T |
51054830 |
gagagtttgaggagtaggacaaaaaatattagcaaatgaatttaa |
51054786 |
T |
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