View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_28 (Length: 257)
Name: NF0440_1D_low_28
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_28 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 63 - 257
Target Start/End: Original strand, 7167712 - 7167906
Alignment:
| Q |
63 |
caagtgcaaccagcctaaacaaactctatatatgtttaaccacaacaaattcagattgcacagagatttaaggaattgaaccaacagaactgaaaaagga |
162 |
Q |
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| T |
7167712 |
caagtgcaaccagcctaaacaaactctatatatgtttaacctcaacaaattcagattgcacagagatttaaggaattgagccaacagaactgaaaaagaa |
7167811 |
T |
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| Q |
163 |
taatcttttcaagcgaatcaactgccactcattcaagcagtcaacactatttgcagaagtcataaacctaattcctattttctataatatcataa |
257 |
Q |
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| T |
7167812 |
taatcttttcaagcgaatcaactgccactcattcaagcagtcaacactatttgcagaagtcataaacctaattcctattttctataatatcataa |
7167906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 11238905 - 11238704
Alignment:
| Q |
43 |
tgttgagacaaaaactataacaagtgcaaccagcctaaacaaactctatatatgtttaaccacaacaaattcagattgcacagagatttaaggaattgaa |
142 |
Q |
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| T |
11238905 |
tgttgagacaaaacttataacaagtgcaaccagcctaaacaaactctgtgtctaat-aacttcaacaaactcaagttgcacagagattcaaggaattgag |
11238807 |
T |
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| Q |
143 |
ccaacagaactgaaaa-aggataatcttttcaagcgaatcaactgccactcattcaagcagtcaacactatttgcagaagtcataaacctaattcctatt |
241 |
Q |
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| T |
11238806 |
ctaacagaactgaaaagagaataat-ttctcaagcaaatcaactgccactaattcaagcagtcgacacaatttgcagaagtcatacacctaatccctatt |
11238708 |
T |
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| Q |
242 |
ttct |
245 |
Q |
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|||| |
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| T |
11238707 |
ttct |
11238704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 7173242 - 7173407
Alignment:
| Q |
29 |
caagtacacttatatgttgagacaaaaactataacaagtgcaaccagcctaaacaaactctatatatgtttaaccacaacaaattcagattgcacagaga |
128 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| ||| |||| || |
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| T |
7173242 |
caagtgcacttatatgttgagacaaaagctataacaagtgcaaccagcataaacaaactctatatatgtttaaccttaactaactcaagttgaacagcga |
7173341 |
T |
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| Q |
129 |
tttaaggaattgaaccaacagaactgaaaaagga-taatcttttcaagcgaatcaactgccactcat |
194 |
Q |
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| T |
7173342 |
ttt-aggaaatgagctaacagaaatgaaaaagaattaatcttttcaagcaaatcaactgctactcat |
7173407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 24725271 - 24725197
Alignment:
| Q |
29 |
caagtacacttatatgttgagacaaaaactataacaagtgcaaccagcctaaacaaactctatatatgtttaacc |
103 |
Q |
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| T |
24725271 |
caagtgcacctatatgttgagacaaaagctataacaagtgaaaccagcctaaacaaactcaatataagttaaacc |
24725197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 24724410 - 24724287
Alignment:
| Q |
124 |
agagatttaaggaattgaaccaacagaactgaaaaaggataatcttttcaagcgaatcaactgccactcattcaagcagtcaacactatttgcagaagtc |
223 |
Q |
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||||||| ||||||| | | ||||||||| |||||| ||||||||||||||| ||| ||| ||||| ||||||| |||| |||| |||| |||||| |
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| T |
24724410 |
agagattataggaattaagctaacagaactaaaaaagaataatcttttcaagcatatctactaccactaattcaagtagtcgacacaatttacagaagct |
24724311 |
T |
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| Q |
224 |
ataaacctaattcctattttctat |
247 |
Q |
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|| |||||||||||||||||||| |
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| T |
24724310 |
gtagacctaattcctattttctat |
24724287 |
T |
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