View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_1D_low_3 (Length: 594)

Name: NF0440_1D_low_3
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_1D_low_3
NF0440_1D_low_3
[»] chr8 (1 HSPs)
chr8 (1-572)||(23560807-23561378)
[»] chr4 (12 HSPs)
chr4 (66-187)||(31696735-31696856)
chr4 (66-187)||(31707827-31707948)
chr4 (307-345)||(31717079-31717117)
chr4 (307-345)||(31722953-31722991)
chr4 (307-345)||(31724306-31724344)
chr4 (26-127)||(31701982-31702083)
chr4 (307-345)||(31701773-31701811)
chr4 (298-339)||(31707697-31707738)
chr4 (298-355)||(31732469-31732526)
chr4 (298-355)||(31745370-31745427)
chr4 (87-187)||(31732633-31732733)
chr4 (87-187)||(31745534-31745634)
[»] chr3 (5 HSPs)
chr3 (300-342)||(1107021-1107063)
chr3 (63-109)||(1050126-1050172)
chr3 (67-136)||(5502076-5502145)
chr3 (67-151)||(5445451-5445535)
chr3 (67-151)||(5454034-5454118)
[»] chr5 (1 HSPs)
chr5 (300-366)||(28419333-28419399)
[»] chr6 (1 HSPs)
chr6 (67-151)||(25810277-25810361)
[»] chr2 (1 HSPs)
chr2 (63-103)||(34207561-34207601)


Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 23560807 - 23561378
Alignment:
Q  1 tcaaccaatttaagctattgtttggcatgtactcataaactagcattcgatgttcttcctcgatgcaacagccaagaagtttaacaagatttctgtgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560807 tcaaccaatttaagctattgtttggcatgtactcataaactagcattcgatgttcttcctcgatgcaacagccaagaagtttaacaagatttctgtgttg 23560906  T
Q  101 aagttttgctataagttttacttcattctttaactcgttagttacttgtccagagtcacttgaaagcctcttcacagcaatttcttgtcgacttgccaat 200  Q
    |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560907 aagttttgctataagttttacttcattctttaactcgttaattccttggccagagtcacttgaaagcctcttcacagcaatttcttgtcgacttgccaat 23561006  T
Q  201 cttccctacataataacatataaaagtaaattaagacactttttaatcacattgatagtatagttaattaatcctttttcctacataatatatacttaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23561007 cttccctacataataacatataaaagtaaattaagacactttttaatcacattgatagtatagttaattaatcctttctcctacataatatatacttaat 23561106  T
Q  301 taccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaagttatcagtggcagtgactaaggttgaatatgtaagcagtgggaga 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23561107 taccttgtatacaggtccaaaaccaccttctccaatcttgttcttgatcgagaagttatcagtggcagtgactaaggttgaatatgtaagcagtgggaga 23561206  T
Q  401 tcgagatcatcctcatcttcactacctctgccaccttctagttcaatattttctgaatcctctgataaaatggaacaatggcttcagtttagtttaagga 500  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23561207 tcaagatcatcctcatcttcactacctctgccaccttctagttcaatattttctgaatcctctgataaaatggaacaatggcttcagtttagtttaaggc 23561306  T
Q  501 ataaggtaagaggtatatgataaatcattaactactgacatgctgccgaaaacagaccatacatgattatta 572  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23561307 ataaggtaagaggtatgtgataaatcattaactactgacatgctgccgaaaacagaccatacatgattatta 23561378  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 31696856 - 31696735
Alignment:
Q  66 caacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtccagagtcacttgaaa 165  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| || |||||||||||  |    |||||| || || |||||||||||| ||||||||    
T  31696856 caacagccaagaagcttaaccagatttcggtgttgaagttttgcaatcagttttacttctgttaggaactcggtaattccttgtccagagttacttgaaa 31696757  T
Q  166 gcctcttcacagcaatttcttg 187  Q
    | ||||| ||||||||||||||    
T  31696756 gtctcttaacagcaatttcttg 31696735  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 31707948 - 31707827
Alignment:
Q  66 caacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtccagagtcacttgaaa 165  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| || |||||||||||  |    |||||  || || ||||||||||||   ||||||    
T  31707948 caacagccaagaagcttaaccagatttcggtgttgaagttttgcaatcagttttacttctgttaagaactcagtaattccttgtccagagtttgttgaaa 31707849  T
Q  166 gcctcttcacagcaatttcttg 187  Q
    | ||||| ||||||||||||||    
T  31707848 gtctcttgacagcaatttcttg 31707827  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 31717117 - 31717079
Alignment:
Q  307 atatacaggtccaaaaccaccttctccaatcttgttctt 345  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31717117 atatacaggtccaaaaccaccttctccaattttgttctt 31717079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 31722991 - 31722953
Alignment:
Q  307 atatacaggtccaaaaccaccttctccaatcttgttctt 345  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31722991 atatacaggtccaaaaccaccttctccaattttgttctt 31722953  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 31724344 - 31724306
Alignment:
Q  307 atatacaggtccaaaaccaccttctccaatcttgttctt 345  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31724344 atatacaggtccaaaaccaccttctccaattttgttctt 31724306  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 31702083 - 31701982
Alignment:
Q  26 catgtactcataaactagcattcgatgttcttcctcgatgcaacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttca 125  Q
    |||||| |||||||||| ||||   | ||||  ||| ||||||||||||| ||| || |||||||||| ||| ||||  ||||| |||||||||||||||    
T  31702083 catgtattcataaactaacattttttcttctctctcaatgcaacagccaataagctttacaagatttcggtgctgaacatttgcaataagttttacttca 31701984  T
Q  126 tt 127  Q
    ||    
T  31701983 tt 31701982  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 31701811 - 31701773
Alignment:
Q  307 atatacaggtccaaaaccaccttctccaatcttgttctt 345  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  31701811 atatacagttccaaaaccaccttctccaattttgttctt 31701773  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 31707738 - 31707697
Alignment:
Q  298 aattaccttatatacaggtccaaaaccaccttctccaatctt 339  Q
    ||||||||| ||||||| |||||||||||||| |||||||||    
T  31707738 aattaccttgtatacagatccaaaaccaccttgtccaatctt 31707697  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 31732526 - 31732469
Alignment:
Q  298 aattaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaag 355  Q
    |||||||||||| |||| ||||||||||||||| ||||| || || ||| ||||||||    
T  31732526 aattaccttatacacagttccaaaaccaccttcgccaattttattgtttcttgagaag 31732469  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 31745427 - 31745370
Alignment:
Q  298 aattaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaag 355  Q
    |||||||||||| |||| ||||||||||||||| ||||| || || ||| ||||||||    
T  31745427 aattaccttatacacagttccaaaaccaccttcgccaattttattgtttcttgagaag 31745370  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 31732733 - 31732633
Alignment:
Q  87 agatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtccagagtcacttgaaagcctcttcacagcaatttctt 186  Q
    ||||||| ||||||||||||||| || || |||||||||||  | |||||| |  || ||||||| |||   |||||||| ||||| || ||||||||||    
T  31732733 agatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccgagatgcttgaaagtctcttaactgcaatttctt 31732634  T
Q  187 g 187  Q
    |    
T  31732633 g 31732633  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 31745634 - 31745534
Alignment:
Q  87 agatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtccagagtcacttgaaagcctcttcacagcaatttctt 186  Q
    ||||||| ||||||||||||||| || || |||||||||||  | |||||| |  || ||||||| |||   |||||||| ||||| || ||||||||||    
T  31745634 agatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccgagatgcttgaaagtctcttaactgcaatttctt 31745535  T
Q  187 g 187  Q
    |    
T  31745534 g 31745534  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 1107063 - 1107021
Alignment:
Q  300 ttaccttatatacaggtccaaaaccaccttctccaatcttgtt 342  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  1107063 ttaccttatataccggtccaaaaccaccttctccaagcttgtt 1107021  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 1050172 - 1050126
Alignment:
Q  63 atgcaacagccaagaagtttaacaagatttctgtgttgaagttttgc 109  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||    
T  1050172 atgcaacaaccaagaaccttaacaagatttcggtgttgaagttttgc 1050126  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 5502076 - 5502145
Alignment:
Q  67 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactc 136  Q
    |||| |||||||||||||||||||| | |||||||||| |||| || |  ||||||||||| || |||||    
T  5502076 aacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactc 5502145  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 5445451 - 5445535
Alignment:
Q  67 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtcc 151  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | |||| |||||||    
T  5445451 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 5445535  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 5454034 - 5454118
Alignment:
Q  67 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtcc 151  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | |||| |||||||    
T  5454034 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 5454118  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 28419399 - 28419333
Alignment:
Q  300 ttaccttatatacaggtccaaaaccaccttctccaatcttgttctttattgagaagttatcagtggc 366  Q
    ||||||| ||||| |||||||| |||||||| |||| ||| || ||  |||||||||||||||||||    
T  28419399 ttaccttgtatacgggtccaaatccaccttcaccaagcttattgttggttgagaagttatcagtggc 28419333  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 25810361 - 25810277
Alignment:
Q  67 aacagccaagaagtttaacaagatttctgtgttgaagttttgctataagttttacttcattctttaactcgttagttacttgtcc 151  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| || |  ||||||||||| || ||||| | |||| |||||||    
T  25810361 aacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcc 25810277  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 34207601 - 34207561
Alignment:
Q  63 atgcaacagccaagaagtttaacaagatttctgtgttgaag 103  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  34207601 atgcaacagccaagtagtttcacaagatttctgtgctgaag 34207561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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