View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_30 (Length: 249)
Name: NF0440_1D_low_30
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42506627 - 42506827
Alignment:
| Q |
1 |
tcagaggtcattaaagaggaaatgagcttgttgaataacaactccatccaccatgttttccccaattgtcccatgaatgtggggtaactggtaagtgttg |
100 |
Q |
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| T |
42506627 |
tcagaggtcattaaagaggaaatgagcttgttgaataacaactccatccaccatgttttccccaattgtcccatgaatgtg-------tggtaagtgttg |
42506719 |
T |
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| Q |
101 |
actttctaatgaagaaggtaacatcaaaagtgtggtaataatacaaagatctaaacgtatcaacatctatgaaagagaagcaccccacccaacataagca |
200 |
Q |
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| T |
42506720 |
actttctaatgaagaaggtaacatcaaaagtgtggtaataatacaaagatctaaacgtattaacatctatgaaagagaagcaccccacccaacataagca |
42506819 |
T |
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| Q |
201 |
catagtgc |
208 |
Q |
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| T |
42506820 |
catagtgc |
42506827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 18943862 - 18943780
Alignment:
| Q |
89 |
tggtaagtgttgactttctaatgaagaaggtaacatcaaaagtgtggtaataatacaaagatctaaacgtatcaacatctatg |
171 |
Q |
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| T |
18943862 |
tggtaagtgttgactttctaatgaagaaggtaacatcaaaagtgtggtagtaatacaaagatctaaatgtattaacatctatg |
18943780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 18943908 - 18943870
Alignment:
| Q |
9 |
cattaaagaggaaatgagcttgttgaataacaactccat |
47 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| |
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| T |
18943908 |
cattgaagaggaaatgagcttgttgaataacagctccat |
18943870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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