View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_31 (Length: 242)
Name: NF0440_1D_low_31
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 43410034 - 43410253
Alignment:
| Q |
18 |
atcacaatctgaaagtaattaaatatataataattttgtgatacagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggc |
117 |
Q |
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| T |
43410034 |
atcacaatctgaa-gtaattaaata----ataattttgtgatacagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggc |
43410128 |
T |
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| Q |
118 |
cttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgattgattctgttcaaggtgcagagggtgccatacagattggctcttt |
217 |
Q |
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| T |
43410129 |
cttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgattgattctgttcaaggtgcagagggtgccatacagattggctcttt |
43410228 |
T |
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| Q |
218 |
ctatgccagcttcccagagttgagc |
242 |
Q |
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| T |
43410229 |
ctatgccagcttcccagagttgagc |
43410253 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 25531358 - 25531416
Alignment:
| Q |
60 |
acagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggcc |
118 |
Q |
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| T |
25531358 |
acagtttgtccaacaactctgaagagaatatgcagacaacatggaatttcaagatggcc |
25531416 |
T |
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