View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440_1D_low_33 (Length: 237)
Name: NF0440_1D_low_33
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_33 |
 | |
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| [»] chr8 (6 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr3 (8 HSPs) |
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| [»] chr2 (5 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold1764 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold1257 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 16753842 - 16753981
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
16753842 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctaaaccgctccaccactttcctcaagtacccctgc |
16753941 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16753942 |
tgagataagaacaactcacctttgttccggtcccttatga |
16753981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 4813808 - 4813947
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
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|
| T |
4813808 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
4813907 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4813908 |
tgagataagaacaactcacctttgttccggtcccttatga |
4813947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 25683506 - 25683367
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
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|
| T |
25683506 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
25683407 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25683406 |
tgagataagaacaactcacctttgttccggtcccttatga |
25683367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 28894363 - 28894224
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
28894363 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
28894264 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28894263 |
tgagataagaacaactcacctttgttccggtcccttatga |
28894224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 28331494 - 28331355
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
28331494 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
28331395 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28331394 |
tgagataagaacaactcacctttgttctggtcccttatga |
28331355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 15948366 - 15948247
Alignment:
| Q |
117 |
gtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgctgagataagaacaactcac |
216 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||| |||| ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
15948366 |
gtgtgatgaccaagaggagtgccaacgaccttagaatctttcattctgaaccactcatccac-ttcctcaagtacccctgcttagataagaacaactcac |
15948268 |
T |
|
| Q |
217 |
ctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
15948267 |
ctttgttttggtccctcatga |
15948247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 3321370 - 3321509
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
3321370 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctaaaccgctccaccactttcctcaagtacccctac |
3321469 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3321470 |
tgagataagaacaactcacctttgttccggtcccttatga |
3321509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 25404256 - 25404117
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25404256 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
25404157 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25404156 |
tgagataagaacaactcacctttgttccggtcccttatga |
25404117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 7073649 - 7073511
Alignment:
| Q |
99 |
tgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgct |
198 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
|
|
| T |
7073649 |
tgctttatagataactttgtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgct |
7073550 |
T |
|
| Q |
199 |
gagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7073549 |
gagataagaacaactcacctttgttccggtcccttatga |
7073511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 25409013 - 25408874
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25409013 |
ctgctttatagatagctttgtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
25408914 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
25408913 |
tgagataagaacaactcacctttgttccggtacctcatga |
25408874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 13882338 - 13882199
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
13882338 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
13882239 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13882238 |
tgagataagaacaactcacctttgttccggtcccttatga |
13882199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 35202645 - 35202784
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
35202645 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
35202744 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35202745 |
tgagataagaacaactcacctttgttccggtcccttatga |
35202784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 22345582 - 22345721
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||| |
|
|
| T |
22345582 |
ctgctttattgataactttgtgtgatgaccaagaggagtgccaacgactttagaatctttcattatgaaccactccaccactttcctcaagtacccctgc |
22345681 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
22345682 |
tgagataagaacaattcacctttgttccggtccctcatga |
22345721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 10900608 - 10900469
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
10900608 |
ctgctttatagatagctttgtgtggtgaccaagaggagtgccaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
10900509 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10900508 |
tgagataagaacaactcacctttgttccggtcccttatga |
10900469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 47879471 - 47879610
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
47879471 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
47879570 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47879571 |
tgagataagaacaactcacctttgttccggtcccttatga |
47879610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 10202274 - 10202413
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
10202274 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
10202373 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10202374 |
tgagataagaacaactcacctttgttccggtctcttatga |
10202413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 10095389 - 10095527
Alignment:
| Q |
99 |
tgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgct |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
|
|
| T |
10095389 |
tgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgct |
10095488 |
T |
|
| Q |
199 |
gagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10095489 |
gagataagaacaactcacctttgttccggtctcttatga |
10095527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 16461059 - 16460924
Alignment:
| Q |
102 |
tttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgctgag |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
16461059 |
tttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgttgag |
16460960 |
T |
|
| Q |
202 |
ataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16460959 |
ataagaacaactcacctttgttccggtcccttatga |
16460924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 10596328 - 10596467
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| | |
|
|
| T |
10596328 |
ctgctttattgatagctttgtgtgatgaccaagaggagtgccaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctac |
10596427 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10596428 |
tgagataagaacaactcacctttgttccggtcccttatga |
10596467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 54192107 - 54191968
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
54192107 |
ctgctttattgatagctttgtgtggtgaccaagaggagtgctagcgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
54192008 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54192007 |
tgagataagaacaactcacctttgttccggtcccttatga |
54191968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 22622793 - 22622846
Alignment:
| Q |
184 |
tcaagtactcctgctgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22622793 |
tcaagtacccttgctgagataagaacaactcacctttgttccggtcccttatga |
22622846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 22713816 - 22713955
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
22713816 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
22713915 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22713916 |
tgagataagaacaactcacctttgttccggtcccttatga |
22713955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 39685846 - 39685707
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
39685846 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
39685747 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39685746 |
tgagataagaacaactcacctttgttctggtcccttatga |
39685707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 2739804 - 2739665
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
2739804 |
ctgctttatatatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
2739705 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2739704 |
tgagataagaataactcacctttgttccggtcccttatga |
2739665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 17942417 - 17942281
Alignment:
| Q |
101 |
ctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgctga |
200 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||| |
|
|
| T |
17942417 |
ctttatagatagctttgtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccatgctga |
17942318 |
T |
|
| Q |
201 |
gataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17942317 |
gataagaacaactcacctttgttccggtccctcatga |
17942281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 20051344 - 20051483
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
20051344 |
ctgctttattgatagctttgtatggtgaccaagaggagtgccaacgactttagaatctttcattctgaaccgcttcaccactttcctcaagtacccctgc |
20051443 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20051444 |
tgagataagaacaactcacctttgtttcggtccctcatga |
20051483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 9525327 - 9525188
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
9525327 |
ctgctttatagatagcttagtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
9525228 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9525227 |
tgagataagaacaactcacctttgttccggtcccttatga |
9525188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 2395851 - 2395990
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||| |
|
|
| T |
2395851 |
ctgctttattgatagctttgtgtgatgaccaagaggagtgccaacgactttagaatctttcattctgaaccgctccaccactttccttaagtacccctgc |
2395950 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
2395951 |
tgagataagaacaactcacctttgtttcgatccctcatga |
2395990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 18603881 - 18603784
Alignment:
| Q |
4 |
atgaaggaggcaatagcgcaaactaagtctgttctcccggaccgacatcaaaaacttttgtatcaaacagtcactgaggatcagacacaggcatctgc |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
18603881 |
atgaaggaggcaatggcgcaaactaagtctgttcacccggaccggcatcaaaaacttttgtatcaaacagttactgaggatctgacataggcatctgc |
18603784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1764 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1764
Description:
Target: scaffold1764; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 318 - 179
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
318 |
ctgctttatagatagctttgtgtggtgaccaagaggagtgctaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
219 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
218 |
tgagataagaacaactcacctttgttccggtcccttatga |
179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 25451356 - 25451217
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
25451356 |
ctgctttatagatagcatagtgtggtgaccaaaaggagtgctaatgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
25451257 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25451256 |
tgagataagaacaactcacctttgttccggtcccttatga |
25451217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 15315916 - 15315777
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||| | |
|
|
| T |
15315916 |
ctgctttattgatagctttgtgtggtgaccaagaggagtgccaacaactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctac |
15315817 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15315816 |
tgagataagaacaactcaactttgttccggtcccttatga |
15315777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 4568942 - 4568808
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| || | ||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
4568942 |
ctgctttattgaaaactttgtgtgatgaccaggaggagtgccaacgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
4568843 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtccct |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
4568842 |
tgagataagaacaactcacctttgtttcggtccct |
4568808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 16637741 - 16637621
Alignment:
| Q |
117 |
gtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgctgagataagaacaactcac |
216 |
Q |
| |
|
||||| |||| |||||||||| ||| ||| ||||||| ||||||| | |||||||||||||||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
16637741 |
gtgtgatgaccaagaggagtgtcaatgaccttagaatatttcattatgaaccgctccaccactttcctcaagtacctttcctgagataagaacaaatcac |
16637642 |
T |
|
| Q |
217 |
ctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||| |||||||| |||| |
|
|
| T |
16637641 |
ctttgtttcggtccctcatga |
16637621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1257 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1257
Description:
Target: scaffold1257; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 657 - 518
Alignment:
| Q |
98 |
ctgctttatagatagcttagtgtggtgactaagaggagtgccaacgactttagaatctttcattctaaaccgctccaccactttcttcaagtactcctgc |
197 |
Q |
| |
|
||||||||| |||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
657 |
ctgctttattgatagctttgtgtgatgaccaagaggagtgccagcgactttagaatctttcattctgaaccgctccaccactttcctcaagtacccctgc |
558 |
T |
|
| Q |
198 |
tgagataagaacaactcacctttgttccggtcccttatga |
237 |
Q |
| |
|
||||||||||| | |||||||||||| || ||||| |||| |
|
|
| T |
557 |
tgagataagaaaacctcacctttgtttcgatccctcatga |
518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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