View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_35 (Length: 234)
Name: NF0440_1D_low_35
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 53788093 - 53788241
Alignment:
| Q |
17 |
tccatctatctaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaactg-ttccattatttgagtatttgaataattttctttccaatat |
115 |
Q |
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| T |
53788093 |
tccatctatccaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaaccggttccattatttgagtattgcaataatttttttcccaatat |
53788192 |
T |
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| Q |
116 |
ttagtcacttccagcatcttgattcaatttgacattctcttccattaca |
164 |
Q |
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| T |
53788193 |
ttaatcacttccagcatcttgattcaatttaacattctcttctattaca |
53788241 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 5273173 - 5273237
Alignment:
| Q |
120 |
tcacttccagcatcttgattcaatttgacattctcttccattacaatctcgttcaggggtggaac |
184 |
Q |
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| T |
5273173 |
tcacttgcagaatcttcattcattctcacattctcttccattacaatctcattaagggatggaac |
5273237 |
T |
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