View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_1D_low_38 (Length: 223)
Name: NF0440_1D_low_38
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 1807102 - 1806935
Alignment:
| Q |
50 |
ttagtggttggattaatatttactcgtttgtccatatttaaaatataatcaacaacatcttaaaccttagctcaaaccagtcgagcttcttggaggatat |
149 |
Q |
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| T |
1807102 |
ttagtggttggattaatatttactcgtttgtccatatttaaaatagaatcaacaacatcttaaaccttagctcaaaccagtcgagcttcttggaggatat |
1807003 |
T |
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| Q |
150 |
atgtaatgactttgtttatataatatctttactatcgtatttacagtcacatcagtcatgtttgatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807002 |
atgtaatgactttgtttatataatatctttactatcgtatttacagtcacatcagtcatgtttgatgt |
1806935 |
T |
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