View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440_1D_low_40 (Length: 221)
Name: NF0440_1D_low_40
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_1D_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 14722019 - 14722230
Alignment:
| Q |
5 |
tggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14722019 |
tggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatc |
14722118 |
T |
|
| Q |
105 |
aatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgagaagcattaggcgcatgatcctagacaaagaaaactcttaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14722119 |
aatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgagaagcattaggcgcatgatcctagacaaagaaaactcttaaaa |
14722218 |
T |
|
| Q |
205 |
tctcaaattcct |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14722219 |
tctcaaattcct |
14722230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 36935876 - 36935823
Alignment:
| Q |
83 |
aacaacccttaatagaaccatcaatattacacttgacccaactaaggatggggg |
136 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
36935876 |
aacaacccttattaataccatcaatattacactagacccaattaaggatggggg |
36935823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 17602172 - 17601961
Alignment:
| Q |
5 |
tggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17602172 |
tggtgttatgcatattgaccgcaacctaaatttaagcatcctcatccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatc |
17602073 |
T |
|
| Q |
105 |
aatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgagaagcattaggcgcatgatcctagacaaagaaaactcttaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17602072 |
aatattacacttgacccaactaaggatgggggataccataaaaccgccttgatgcgagaagcattaggcgcatgatcctagacaaagaaaactcttaaaa |
17601973 |
T |
|
| Q |
205 |
tctcaaattcct |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17601972 |
tctcaaattcct |
17601961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 15887048 - 15887087
Alignment:
| Q |
39 |
agcatcctcatccctaaaaatcccactacaagttgcaggt |
78 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15887048 |
agcatccttatccctaaaaatcccactacaagttgcaggt |
15887087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 12453044 - 12452956
Alignment:
| Q |
48 |
atccctaaaaatcccactacaagttgcaggtcggaaacaacccttaatagaaccatcaatattacacttgacccaactaaggatggggg |
136 |
Q |
| |
|
||||||||||||||||| |||| ||||||| | |||||||||| |||||||||| || |||| |||| | | ||||||||||||| |
|
|
| T |
12453044 |
atccctaaaaatcccaccacaaattgcagggcttgcacaacccttaggagaaccatcagtactacatttgatctagctaaggatggggg |
12452956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University