View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_1D_low_45 (Length: 215)

Name: NF0440_1D_low_45
Description: NF0440_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_1D_low_45
NF0440_1D_low_45
[»] chr4 (2 HSPs)
chr4 (121-197)||(11016861-11016937)
chr4 (42-98)||(11016933-11016989)
[»] chr7 (2 HSPs)
chr7 (130-197)||(19112602-19112669)
chr7 (145-197)||(47609150-47609202)
[»] chr3 (3 HSPs)
chr3 (122-197)||(36903613-36903688)
chr3 (130-197)||(19155025-19155092)
chr3 (148-193)||(20909242-20909287)
[»] chr5 (1 HSPs)
chr5 (114-197)||(13876757-13876840)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 11016937 - 11016861
Alignment:
Q  121 atttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  11016937 atttggtattgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcat 11016861  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 11016989 - 11016933
Alignment:
Q  42 aataaaaataacataaaagaaaagcaactagaaaccaattgacgatagtcgaatttg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11016989 aataaaaataacataaaagaaaagcaactagaaaccaattgacaatagtcgaatttg 11016933  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 19112669 - 19112602
Alignment:
Q  130 tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  19112669 tgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcat 19112602  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 47609202 - 47609150
Alignment:
Q  145 aaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    ||||||||||| |||| |||||||||||||||||||| || ||||||||||||    
T  47609202 aaaatcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcat 47609150  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 36903613 - 36903688
Alignment:
Q  122 tttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    ||||||||| ||| | ||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  36903613 tttggtattacggtacatcaaacaaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcat 36903688  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 19155025 - 19155092
Alignment:
Q  130 tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    |||| ||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||| |||||||||    
T  19155025 tgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcat 19155092  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 20909287 - 20909242
Alignment:
Q  148 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagct 193  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||    
T  20909287 atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagct 20909242  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 13876757 - 13876840
Alignment:
Q  114 atggcctatttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcat 197  Q
    ||||||| |||| ||||| || | ||||| |||||||||||| |||||||| || |||||||||||||||| ||||| ||||||    
T  13876757 atggcctgtttgatattgtggtacatcaaacaaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcat 13876840  T

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