View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_high_1 (Length: 706)
Name: NF0440_2D_high_1
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 326 - 630
Target Start/End: Original strand, 35219078 - 35219382
Alignment:
| Q |
326 |
ggcacacaacacgcgcctagtgtcggctgggactatcattagacaatagacagcagccctcgcttatcttcccttcttattaacttctttccatttgccc |
425 |
Q |
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| T |
35219078 |
ggcaaacaacacgcgcctagtgtcggctgggactatcattagacaatagacagtagccctcgcttatcttcccttcttattaacttctttccctttgccc |
35219177 |
T |
|
| Q |
426 |
catcacaattattttcctttcattttcttggacacatacatacccacgtccaataaaatcaaacccccttcattacatttacacgttcagttgttatctt |
525 |
Q |
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| T |
35219178 |
catcacaattattttcctttcattttcttggacacatacatacccacgtccaataaaatcaaacacccttcattacatttacacgttcagttgttatctt |
35219277 |
T |
|
| Q |
526 |
taaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaactatggactctatcagcacaagtagcaccagttcatcagtgattagt |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35219278 |
taaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaactatggactctatcagcacaagtagcaccagttcatcagtgattagt |
35219377 |
T |
|
| Q |
626 |
actgt |
630 |
Q |
| |
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||||| |
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| T |
35219378 |
actgt |
35219382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 35218741 - 35219009
Alignment:
| Q |
1 |
ttttttccgaagaaattaaactagtcatataaattggcatcgaaaacaatcgaacttgagaccttaaagaaaaacacactcaaagtcaaatatcacatgt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||| |
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| T |
35218741 |
ttttttccaaagaaattaaactagtcatataaattggcatcgaaaacaatcgaacttgagaccttaaaggaaaacacatttaaagtcaaatgtcacatgt |
35218840 |
T |
|
| Q |
101 |
caatgccatcagatcaacttaaatgggtttacaactataaacattaatctcttgagtcgggtaagactaatgtttgtcaaaattcctttattgaattcga |
200 |
Q |
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|||||||| |||||||||| ||||||||| ||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35218841 |
caatgccaccagatcaactcaaatgggttcacaactataaacactaatctcttgggttgggcaagactaatgtttgtcaaaattcctttattgaattcga |
35218940 |
T |
|
| Q |
201 |
attcagatctctagtaaaattaaagaaatcttttaccatcttatccaaaggttcttacatgtttatttc |
269 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35218941 |
attcagatctctagtaaaattaaagagatcttttaccatcttatccaaaggttcttacatgtttatttc |
35219009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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