View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_high_12 (Length: 301)

Name: NF0440_2D_high_12
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_high_12
NF0440_2D_high_12
[»] chr7 (19 HSPs)
chr7 (1-266)||(24658319-24658584)
chr7 (102-259)||(38300325-38300487)
chr7 (86-260)||(1691624-1691803)
chr7 (112-266)||(30074572-30074729)
chr7 (108-258)||(2945347-2945500)
chr7 (144-253)||(33941593-33941703)
chr7 (108-244)||(25232949-25233087)
chr7 (126-259)||(43265892-43266026)
chr7 (108-260)||(39785500-39785654)
chr7 (107-246)||(27080420-27080557)
chr7 (107-246)||(27197744-27197881)
chr7 (108-260)||(46090140-46090298)
chr7 (126-246)||(39780969-39781090)
chr7 (108-184)||(32221862-32221940)
chr7 (148-244)||(10512018-10512115)
chr7 (108-182)||(34346836-34346910)
chr7 (126-183)||(26824465-26824522)
chr7 (126-216)||(36906279-36906370)
chr7 (126-244)||(40716879-40716998)
[»] chr3 (19 HSPs)
chr3 (109-258)||(7856503-7856653)
chr3 (108-260)||(26285771-26285924)
chr3 (116-259)||(38572987-38573131)
chr3 (109-260)||(24309880-24310032)
chr3 (117-265)||(23778272-23778421)
chr3 (108-266)||(36475470-36475629)
chr3 (106-205)||(52308856-52308956)
chr3 (126-259)||(25070669-25070803)
chr3 (126-259)||(36617735-36617869)
chr3 (149-266)||(36477986-36478106)
chr3 (126-259)||(26903171-26903305)
chr3 (108-183)||(395922-395998)
chr3 (109-181)||(36478213-36478285)
chr3 (132-179)||(23794964-23795011)
chr3 (108-165)||(30136586-30136644)
chr3 (108-165)||(30142715-30142773)
chr3 (108-165)||(30146137-30146195)
chr3 (196-225)||(25203050-25203079)
chr3 (196-225)||(25735263-25735292)
[»] chr5 (11 HSPs)
chr5 (102-235)||(7607236-7607370)
chr5 (109-260)||(36744941-36745095)
chr5 (108-260)||(34751027-34751180)
chr5 (108-266)||(43144564-43144725)
chr5 (108-240)||(26459695-26459826)
chr5 (127-266)||(5069867-5070007)
chr5 (108-260)||(25819080-25819235)
chr5 (126-189)||(33824755-33824818)
chr5 (126-259)||(17076570-17076706)
chr5 (127-235)||(29669996-29670105)
chr5 (126-189)||(5569034-5569097)
[»] chr4 (11 HSPs)
chr4 (108-266)||(2158633-2158792)
chr4 (109-266)||(2813993-2814151)
chr4 (147-258)||(36247913-36248026)
chr4 (126-260)||(1112020-1112155)
chr4 (109-182)||(36247832-36247905)
chr4 (146-260)||(25023182-25023296)
chr4 (158-266)||(4377331-4377443)
chr4 (109-182)||(4377240-4377313)
chr4 (146-266)||(33518114-33518237)
chr4 (109-182)||(33518033-33518107)
chr4 (109-160)||(52849787-52849838)
[»] chr1 (10 HSPs)
chr1 (108-266)||(8064983-8065142)
chr1 (112-266)||(9539557-9539712)
chr1 (110-258)||(27464210-27464359)
chr1 (147-266)||(10781112-10781234)
chr1 (126-259)||(1016963-1017097)
chr1 (109-182)||(10781246-10781319)
chr1 (152-266)||(34912362-34912472)
chr1 (211-266)||(25031052-25031107)
chr1 (151-219)||(23353434-23353503)
chr1 (108-183)||(44563567-44563643)
[»] chr2 (10 HSPs)
chr2 (102-235)||(34190023-34190157)
chr2 (108-266)||(32032977-32033136)
chr2 (108-260)||(7700342-7700494)
chr2 (139-260)||(3357042-3357161)
chr2 (126-246)||(18703622-18703743)
chr2 (110-235)||(34878614-34878740)
chr2 (126-259)||(4075463-4075597)
chr2 (126-188)||(38417811-38417873)
chr2 (126-235)||(27447679-27447788)
chr2 (151-251)||(41009696-41009797)
[»] chr8 (18 HSPs)
chr8 (108-260)||(7681313-7681466)
chr8 (109-266)||(29866166-29866327)
chr8 (109-266)||(44873289-44873447)
chr8 (108-260)||(10381424-10381577)
chr8 (108-260)||(24556854-24557007)
chr8 (102-179)||(34696984-34697061)
chr8 (106-189)||(11993693-11993776)
chr8 (126-259)||(45486153-45486287)
chr8 (135-258)||(6802712-6802836)
chr8 (108-260)||(32161343-32161494)
chr8 (108-258)||(29841119-29841271)
chr8 (129-260)||(43421633-43421764)
chr8 (149-235)||(31235824-31235911)
chr8 (127-244)||(33235575-33235693)
chr8 (126-181)||(11463188-11463243)
chr8 (109-158)||(35990865-35990914)
chr8 (126-237)||(7388101-7388213)
chr8 (108-183)||(43421514-43421590)
[»] scaffold0002 (1 HSPs)
scaffold0002 (108-266)||(461271-461430)
[»] chr6 (10 HSPs)
chr6 (102-259)||(21883254-21883412)
chr6 (112-260)||(6689212-6689363)
chr6 (108-189)||(16461651-16461732)
chr6 (108-266)||(14607707-14607865)
chr6 (126-259)||(18816933-18817067)
chr6 (132-259)||(24901708-24901836)
chr6 (102-189)||(33704111-33704199)
chr6 (128-260)||(30705311-30705444)
chr6 (108-172)||(8150815-8150880)
chr6 (102-158)||(35188047-35188102)
[»] scaffold0311 (1 HSPs)
scaffold0311 (126-253)||(800-928)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 24658319 - 24658584
Alignment:
Q  1 aacaacagacattaaacctgttagtgacaacagaaccaaaatacaaggaatacccaagcctcactatcacaaaactgccaacagctacaccaattcaccc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24658319 aacaacagacattaaacctgttagtgaaaacagaaccaaaatacaaggaatacccaagcctcactatcacaaaactgccaacagctacaccaattcgccc 24658418  T
Q  101 tttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaac 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  24658419 tttacctcattctttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattgctaatgttaatagaac 24658518  T
Q  201 atctctttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  24658519 atctctttctatataagttacaagacggtcatttagccaccgatcatccattttgttacataggtt 24658584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 38300487 - 38300325
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||| || |||    
T  38300487 ttacctcattgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaac 38300388  T
Q  201 atctctttctata----taagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    |||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38300387 atctatttctatataagtaagttacaagacggtcatttagccactgatcatccattttgttac 38300325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 1691624 - 1691803
Alignment:
Q  86 tacaccaattcaccctttacctcattgtttgatacaat----atattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||| ||||||||||| ||||||||||||||    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||| ||||    
T  1691624 tacaccaattcgccctttacctcgttgtttgatacaattaatatattacaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatca 1691723  T
Q  182 ttgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||| | | |||| |||||||||| | |||||||||||    
T  1691724 ttgttaattgttaatagaacatctctttatatataagttacaagacagccgtttatccactgatcaccaattttgttaca 1691803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 30074729 - 30074572
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctcttt 208  Q
    ||||||||||||| |||||||| ||||||  || ||||||||||||||||||||| || ||||||||||||||||||||| ||||  |||||||||||||    
T  30074729 gtttgatacaatacattacaatcaaaatctcgtctcctatccatttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctcttt 30074630  T
Q  209 ctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||||||||| ||||||||||||| ||||||  |||||||||||| |||||    
T  30074629 ctatataagttacaagatggtcatttagccattgatcactcattttgttacataggtt 30074572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 2945500 - 2945347
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatct 204  Q
    ||||||||||||||||| |||||||| ||||||  || ||||||| ||||||||||||||| ||||||||||||||||| |||| ||||  |||| |||     
T  2945500 cattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgctaattgttaaaagaaaatca 2945401  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  2945400 ctttctatataagctacaagacgatcatttaaccactgatcatccattttgtta 2945347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 33941703 - 33941593
Alignment:
Q  144 tcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatttagccactg 242  Q
    ||||||| |||||||||||||||| |||||| ||||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33941703 tcctatcaatttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccactg 33941604  T
Q  243 atcatccattt 253  Q
    || | ||||||    
T  33941603 attacccattt 33941593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 25232949 - 25233087
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctc 205  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||| ||| |  || ||| | |||  ||||||| ||    
T  25232949 cattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaataacagcgctgctaatttttaaaagaacatttc 25233048  T
Q  206 tttctatataagttacaagacggtcatttagccactgat 244  Q
    ||| ||||||| |||||||||| ||||||||||||||||    
T  25233049 tttttatataaattacaagacgatcatttagccactgat 25233087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 43266026 - 43265892
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||| | | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||||||| ||||||||||    
T  43266026 attacaatgaaaatcatctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctataaaagttacaag 43265927  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  43265926 ccgatcatttaaccattgatcacccattttgttac 43265892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 39785500 - 39785654
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctc 205  Q
    ||||||||||| ||||| | |||||||||||||||| | ||||||||||||| ||||||||||||||| ||| ||||| ||| |||||  |||||  | |    
T  39785500 cattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataattgttaaaagaacgcccc 39785599  T
Q  206 tttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||| ||| |||||||||||||||| |||| |||| | |||| |||| |||||||    
T  39785600 tttcgataaaagttacaagacggtcgtttaaccaccggtcattcattgtgttaca 39785654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 27080420 - 27080557
Alignment:
Q  107 tcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctct 206  Q
    |||||||||||||||||| |  ||||| | |||||| ||||||  |||||||||||||||||||||||||||||||  | | |||||  ||||||| |||    
T  27080420 tcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcatgctaattgttaaaagaacatatct 27080517  T
Q  207 ttctatataagttacaagacggtcatttagccactgatca 246  Q
    || |||||||||||||||| | | ||||| ||||| ||||    
T  27080518 ttttatataagttacaagaagtttatttaaccactaatca 27080557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 27197881 - 27197744
Alignment:
Q  107 tcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctct 206  Q
    |||||||||||||||||| |  ||||| | |||||| ||||||  |||||||||||||||||||||||||||||||  | | |||||  ||||||| |||    
T  27197881 tcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcatgctaattgttaaaagaacatatct 27197784  T
Q  207 ttctatataagttacaagacggtcatttagccactgatca 246  Q
    || |||||||||||||||| | | ||||| ||||| ||||    
T  27197783 ttttatataagttacaagaagtttatttaaccactaatca 27197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 46090298 - 46090140
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt-gttaatgttagtagaacatctct 206  Q
    ||||||||| ||| ||| ||||||||||||||||| || ||| ||||||||||||||||  |||||||||||| || || | |||||  ||||| |||||    
T  46090298 cattgtttggtacgatacattacaatgaaaatcgtctcatattcatttgttgaaaatgaattaaaatgacatccttagtaattgttaaaagaacttctct 46090199  T
Q  207 ttctata-----taagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||     ||| |||||||||  ||||||| ||||| |||||||| |||||||||    
T  46090198 ttctatatatagtaaattacaagacaatcatttatccactaatcatccactttgttaca 46090140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 39781090 - 39780969
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || ||| ||| |  |||||||||||||| ||| ||||||||||    
T  39781090 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 39780991  T
Q  225 acggtcatttagccactgatca 246  Q
     || ||||||| ||| ||||||    
T  39780990 ccgatcatttaaccattgatca 39780969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 32221940 - 32221862
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattg 184  Q
    ||||||||| ||||||| |||||| ||| ||||  || |||||||||||||||||||||||| ||||||||||||||||    
T  32221940 cattgtttggtacaataaattacattgagaatctcgtctcctatccatttgttgaaaatgagttaaaatgacatcattg 32221862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 10512115 - 10512018
Alignment:
Q  148 atccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagccactgat 244  Q
    ||||||||||||||||||||||||||| ||| ||||| ||| || |   |||||||||||||||||| ||||||||  |||||||||||  |||||||    
T  10512115 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctataaaagttacacaacggtcatttaatcactgat 10512018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 34346910 - 34346836
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||| |||||||| |||| | |||||||||| || ||||||||||| |||||||| | |||||||||||||    
T  34346910 cattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgtggaaaatgaacgaaaatgacatcat 34346836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 26824522 - 26824465
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||| | ||||||    
T  26824522 attacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataatatcatt 26824465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 36906279 - 36906370
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataa 216  Q
    |||| |||||||||||| | |||| |  ||||||||| |||| |||||| |||| |||||||| ||| |  |||||||||||||||||||||    
T  36906279 attagaatgaaaatcgtctactattcgattgttgaaagtgagttaaaataacattattgttaattgtcaaaagaacatctctttctatataa 36906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 40716998 - 40716879
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || || ||||||||||||||||||||| |||||| |||    |  ||| | |||  ||||||| ||||||| ||||| ||||||     
T  40716998 attacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataacagtggtactaacttttaaaagaacatttctttctgtataaattacaaa 40716899  T
Q  225 acggtcatttagccactgat 244  Q
    || |||||||||||||||||    
T  40716898 actgtcatttagccactgat 40716879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 7856503 - 7856653
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| |||| ||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  7856503 attgtttgatacaatacattataataaaaatcgtctcctatccatttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctt 7856602  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  7856603 tctatataagttacaagacagtcatttagccactgatcacccattttgtta 7856653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 26285924 - 26285771
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||  ||||||| |||    
T  26285924 cattgtttgatacaatacattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatct 26285825  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||| ||| |||||||||| |||||||||||||| |||| |||||||||||||    
T  26285824 ttctacatatgttacaagacagtcatttagccactaatcacccattttgttaca 26285771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 38572987 - 38573131
Alignment:
Q  116 gatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatat 214  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  215 aagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||    
T  38573087 aagttacacgacgatcatttagccattgatcatcaattttgttac 38573131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 24309880 - 24310032
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||  ||||| ||||||||||||| |||||  ||||||||||||    
T  24309880 attgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctt 24309979  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||| |||||||||||||  ||||||| |||| ||||||||||||| |||||    
T  24309980 tctatgtaagttacaagacattcatttaaccaccgatcatccattttattaca 24310032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 23778272 - 23778421
Alignment:
Q  117 atacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata 215  Q
    ||||| || |||||||| ||||| || || |||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||    
T  23778272 atacattacattacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 23778371  T
Q  216 agttacaagacggtcatttagccactgatcatccattttgttacacaggt 265  Q
    ||| |||| ||||| |||||| ||||||||| ||||||||||||| ||||    
T  23778372 agtaacaaaacggttatttagtcactgatcacccattttgttacataggt 23778421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 36475470 - 36475629
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| | ||||||||||||||| ||| || |||||||| ||||||||| ||||||||||||||| ||| |||||  |||||||||||    
T  36475470 cattgtttgatacaatacactacaatgaaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 36475569  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || ||||||||||||||||||||  |||| | ||||||||  |||||||||||| |||||    
T  36475570 ttttatataagttacaagacggttgtttatcaactgatcactcattttgttacataggtt 36475629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 52308956 - 52308856
Alignment:
Q  106 ctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatct 204  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  52308956 ctcattgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatct 52308857  T
Q  205 c 205  Q
    |    
T  52308856 c 52308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 25070803 - 25070669
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  25070803 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 25070704  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  25070703 ccgatcatttaaccattgatcacccattttgttac 25070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 36617869 - 36617735
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  36617869 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 36617770  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  36617769 ccgatcatttaaccattgatcacccattttgttac 36617735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 36478106 - 36477986
Alignment:
Q  149 tccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata--agttacaagacggtcatttagccactgatc 245  Q
    ||||||| |||||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||||||  |||||||| |||  ||||||| ||||||||    
T  36478106 tccatttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatatataagttacaaaacgaacatttagtcactgatc 36478007  T
Q  246 atccattttgttacacaggtt 266  Q
    ||||||||||||||| |||||    
T  36478006 atccattttgttacataggtt 36477986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 26903171 - 26903305
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| |   ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  26903171 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 26903270  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  26903271 ccgatcatttaaccattgatcacccattttgttac 26903305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 395998 - 395922
Alignment:
Q  108 cattgtttgatacaatatatt-acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||||||||| ||| || |||||||| || | | ||||||||||||||||||||||||||| ||||||||    
T  395998 cattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacatcatt 395922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 36478285 - 36478213
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||||||||  ||||||| ||||| || |   |||||||||||||||||||| |||||||||||||    
T  36478285 attgtttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaatgacatca 36478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 23794964 - 23795011
Alignment:
Q  132 atgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacat 179  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaaagacat 23795011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30136586 - 30136644
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30136586 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30142715 - 30142773
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30142715 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30146137 - 30146195
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30146137 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30146195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 25203079 - 25203050
Alignment:
Q  196 agaacatctctttctatataagttacaaga 225  Q
    ||||||||||||||||||||||||||||||    
T  25203079 agaacatctctttctatataagttacaaga 25203050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 25735263 - 25735292
Alignment:
Q  196 agaacatctctttctatataagttacaaga 225  Q
    ||||||||||||||||||||||||||||||    
T  25735263 agaacatctctttctatataagttacaaga 25735292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 7607370 - 7607236
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    ||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7607370 ttacctcattgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaac 7607271  T
Q  201 atctctttctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||||||||||  |||||||    
T  7607270 atctctttctatataagttacaagacactcattta 7607236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 36744941 - 36745095
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| |||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  36744941 attgtttgatacaataaattacaattaaaatcgtcttatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctt 36745040  T
Q  208 tc--tatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36745041 tctatatataagttacaagacggtcatttagccaccgatcacccattttgttaca 36745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 34751180 - 34751027
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||| |||||||||| | || | || ||||||||||||||||||||||||||||||||| ||| |||||  |  ||||||||    
T  34751180 cattgtttgatacaatacattaaaatgaaaatcatctcgtgtctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctct 34751081  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  34751080 ttatatataagttacaaaacggttatttagccaccgatcatccattttgttaca 34751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 43144564 - 43144725
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaat--cgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatct 204  Q
    ||||||||||||||||| ||||||||||||||  | | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||  |||||||||    
T  43144564 cattgtttgatacaatacattacaatgaaaatttcttctccaatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatct 43144663  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
     |||||||||| |||||||||| ||||||||| || || ||| ||||||||||||| |||||    
T  43144664 ttttctatatatgttacaagacagtcatttagtcattggtcacccattttgttacataggtt 43144725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 26459695 - 26459826
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctctt 207  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |  | | |||||   ||| |||||||    
T  26459695 cattgtttgatacaatacattacaatgaaaatcgtgtcctatccatttgttgaaaatgagctaaaatgagagc-tactaattgttaaaggaatatctctt 26459793  T
Q  208 tctatataagttacaagacggtcatttagccac 240  Q
    | ||||||||||||||||| |||||||||||||    
T  26459794 tatatataagttacaagacagtcatttagccac 26459826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 5069867 - 5070007
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| | || | || |||||||||||||||| |||||||| ||||||||||| |||||  | ||||||||||| |||||| ||||||| |    
T  5069867 ttacaatgaaaatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatataggttacaaaa 5069966  T
Q  226 cggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    | ||| |||||||||| |||| | ||||||||||| |||||    
T  5069967 cagtcgtttagccactaatcaccaattttgttacataggtt 5070007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 25819080 - 25819235
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac--atct 204  Q
    |||||||||| |||||| ||||| |||||||| || ||||||||||||||||||||| ||||||||| || | |||  |||  ||||  |||||  ||||    
T  25819080 cattgtttgaaacaatacattacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataactttattactaacagttaaaagaacatatct 25819179  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
     |||||| ||||||||||||||||||||||||||| |||||  |||||| ||||||    
T  25819180 atttctacataagttacaagacggtcatttagccattgatctcccatttggttaca 25819235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 33824818 - 33824755
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||| ||||    
T  33824818 attacaatgaaaatcgtctcctattcatttgttgaaaatgagttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 17076706 - 17076570
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt---agtagaacatctctttctatataagttaca 222  Q
    ||||||||||||||||| | | || |||||||||||||||||||| ||| |||||| || ||||  |   |  | |||||||||||| ||||||||||||    
T  17076706 attacaatgaaaatcgtctaccattcatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaaaaaaacatctctttcaatataagttaca 17076607  T
Q  223 agacggtcatttagccactgatcatccattttgttac 259  Q
    || || ||||||| ||| |||||  ||||||||||||    
T  17076606 agtcgatcatttaaccattgatcgcccattttgttac 17076570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 29669996 - 29670105
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    ||||||||||||| || | |||  |||||||||||||| ||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||| ||||    
T  29669996 ttacaatgaaaattgtcttctaatcatttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatataagttagaaga 29670095  T
Q  226 cggtcattta 235  Q
     | |||||||    
T  29670096 tgatcattta 29670105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 5569034 - 5569097
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||| || || ||||||||||||||||||||| |||||| ||| ||||| ||||    
T  5569034 attacaatgaaaattgtctcgtatccatttgttgaaaatgagttaaaataacaacattgctaat 5569097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 2158633 - 2158792
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||| |||||  |||| ||||||    
T  2158633 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaataatatcattgctaattgttaaaagaagatctct 2158732  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||| |||||||||||||||||||||||   |||| ||||||||||||| |||||    
T  2158733 ttctatataggttacaagacggtcatttagccatcaatcacccattttgttacataggtt 2158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 2813993 - 2814151
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctt 207  Q
    |||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| ||| |||||  | | ||| | ||    
T  2813993 attgtttgatacaatacattacaatgaaagtcgtctcatatccatttgttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatt 2814092  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||| ||||||||| ||||||||||||  |||||||||||| ||| ||||| |||||    
T  2814093 tctatacaagttacaatacggtcatttagttactgatcatccagtttattacataggtt 2814151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 36247913 - 36248026
Alignment:
Q  147 tatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatat--aagttacaagacggtcatttagccactga 243  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||| |||||||||||  ||||||||| |||||||||||||||||||    
T  36247913 tatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatatgtaagttacaaaacggtcatttagccactga 36248011  T
Q  244 tcatccattttgtta 258  Q
    |||||||||||||||    
T  36248012 tcatccattttgtta 36248026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 1112020 - 1112155
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || || |||||||||||||||||||| ||||||| || || |||||||| ||||  ||||||| | |||||||||||||||||||    
T  1112020 attacaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataacctcgttgttaattgttaaaagaacatgtatttctatataagttacaag 1112119  T
Q  225 acggtcatttagccactgatcatccattttgttaca 260  Q
    ||  ||||||| ||| ||||||||||||||||||||    
T  1112120 acaatcatttaaccattgatcatccattttgttaca 1112155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 36247832 - 36247905
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  36247832 attgtttgatacaatacattacaatgaaaatcgtctcatatccatttgttgaaaatgagctaaaatgacatcat 36247905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 25023296 - 25023182
Alignment:
Q  146 ctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatttagccactgat 244  Q
    ||||| ||||||| |||||| |||||||| | ||||||| |||| ||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  25023296 ctatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatataagttacaagacggttatttagccactgat 25023198  T
Q  245 catccattttgttaca 260  Q
    ||| ||||||||||||    
T  25023197 cattcattttgttaca 25023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 4377331 - 4377443
Alignment:
Q  158 tgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt---tctatataagttacaagacggtcatttagccactgatcatccattt 253  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||||| ||   | |||||||||||||||||| |||||||||||||||||| ||||||    
T  4377331 tgaaaatgagctaaaatgacatcattgctaattgtttaaagaacatcttttttctatatataagttacaagacgatcatttagccactgatcacccattt 4377430  T
Q  254 tgttacacaggtt 266  Q
    ||||||| |||||    
T  4377431 tgttacataggtt 4377443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 4377240 - 4377313
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||||    
T  4377240 attgtttgatacaatacattacaatgaaaatcgtcttatatccatttgttgaaaatgagttaaaatgacatcat 4377313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 33518114 - 33518237
Alignment:
Q  146 ctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttc--tatataagttacaagacggtcatttagccactg 242  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||  ||||||||| ||||  |||||||||||||||||| ||| |||||||||     
T  33518114 ctatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatatataagttacaagacgatcacttagccactt 33518213  T
Q  243 atcatccattttgttacacaggtt 266  Q
    ||    |||||||||||| |||||    
T  33518214 attgctcattttgttacataggtt 33518237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 33518033 - 33518107
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttg-aaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  33518033 attgtttgatacaatacattacaatgaaaatcgtcttatatccatttgtcgaaaaatgagctaaaatgacatcat 33518107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 52849838 - 52849787
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttga 160  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  52849838 attgtttaatacaatatattacaatgaaaatggtttcctatcaatttgttga 52849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 8064983 - 8065142
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||  |||||||||||    
T  8064983 cattgtttgatacaatacattacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 8065082  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || ||||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||||    
T  8065083 ttttatataagttataagacggtcatttaaccaatgatcatccattttattacataggtt 8065142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 9539712 - 9539557
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttct 210  Q
    ||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||| | ||||||| ||| |||||  ||| ||| ||||| |    
T  9539712 gtttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaataatatcattgcttattgttaaaagatcatatcttttt 9539613  T
Q  211 atataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||| | |||||||||||| || |||||||||||||||||||| |||||    
T  9539612 atataagttacgatacggtcatttagtcattgatcatccattttgttacataggtt 9539557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 27464359 - 27464210
Alignment:
Q  110 ttgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctcttt 208  Q
    ||||||||||||||| || ||||| |||| ||| |  |||| ||||||||||||||| |||||||||| ||||||||||| ||||  |||| |||| |||    
T  27464359 ttgtttgatacaatacatcacaattaaaaccgtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatcttttt 27464260  T
Q  209 ctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  27464259 ctatataagttacaagacggttatttagccactgatcacccattttgtta 27464210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 10781234 - 10781112
Alignment:
Q  147 tatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata--agttacaagacggtcatttagccactga 243  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||| ||||  ||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  10781234 tatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatatataagttacaagacggtcatttagccactga 10781135  T
Q  244 tcatccattttgttacacaggtt 266  Q
    ||| | ||||||||||| |||||    
T  10781134 tcacctattttgttacataggtt 10781112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 1017097 - 1016963
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| |||||||| | | ||||||||||||| ||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  1017097 attacaataaaaatcgtctgccatccatttgttgagaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 1016998  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  1016997 ccgatcatttaaccattgatcacccattttgttac 1016963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 10781319 - 10781246
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  |||| |||||||||||||| ||||||||||||||||    
T  10781319 attgtttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgctaaaatgacatcat 10781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 34912362 - 34912472
Alignment:
Q  152 atttgttgaaaatgagctaaaatgacatcattgttaatg-ttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatcca 250  Q
    ||||||| |||||| | ||||||||||||||| |||||| |||  ||||||||| |||||||||||||    |||| ||| |||||||| |||||| |||    
T  34912362 atttgttaaaaatggg-taaaatgacatcatttttaatggttaaaagaacatctatttctatataagt----agacagtcgtttagccattgatcaccca 34912456  T
Q  251 ttttgttacacaggtt 266  Q
    |||||||||| |||||    
T  34912457 ttttgttacataggtt 34912472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25031052 - 25031107
Alignment:
Q  211 atataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||||||||||||| ||||||||| |||| |||| ||||||||||||| |||||    
T  25031052 atataagttacaagaccgtcatttagtcacttatcacccattttgttacataggtt 25031107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 23353434 - 23353503
Alignment:
Q  151 catttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttctatataagtt 219  Q
    ||||||||||||||||| |||||| |||| |||| | ||| |||  ||||||| ||||||||||||||||    
T  23353434 catttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatataagtt 23353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 44563567 - 44563643
Alignment:
Q  108 cattgtttgatacaatatatt-acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||| |||| |||| ||||||||||| || |   ||||||||||||||||||| || |||| ||||||||    
T  44563567 cattgtttgatgcaatttatttacaatgaaaattgtatatcatccatttgttgaaaatgaactgaaataacatcatt 44563643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 34190023 - 34190157
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||    
T  34190023 ttacctcattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaac 34190122  T
Q  201 atctctttctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||||||||||  |||||||    
T  34190123 atctctttctatataagttacaagacattcattta 34190157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 32032977 - 32033136
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctct 206  Q
    ||||||||||||||||| |||| ||||||||||||  |||||||||||||| |||||||| ||||||||||||| |  |||| ||||  |||||||||||    
T  32032977 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 32033076  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||||||||||| ||||| |||| || |||||||||||||||||||| |||||    
T  32033077 ttctatataagttacaagatggtcaattagtcagtgatcatccattttgttacataggtt 32033136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 7700342 - 7700494
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||| ||||||||||| | || ||| ||| |||||||||||||||||||||||||||||| ||| |||||  ||||||| |||    
T  7700342 cattgtttgatacaatacattgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tct 7700440  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||||||||||    
T  7700441 ttctatataagttacaagacaatcatctagccacagatcacctattttgttaca 7700494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 3357161 - 3357042
Alignment:
Q  139 tcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagc 237  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||  | |||||||||||||||||||||||||||||||| ||||||     
T  3357161 tcgtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgtta-aaaaacatctctttctatataagttacaagacggtgatttag- 3357064  T
Q  238 cactgatcatccattttgttaca 260  Q
    |||| ||||||||||||||||||    
T  3357063 cact-atcatccattttgttaca 3357042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 18703743 - 18703622
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||||||||| || ||||||||||||||| ||||||||| ||||| | | ||||| |||| ||||  |||||||||||||||| ||||||||||||    
T  18703743 attacaatgaaaattgtctcctatccatttgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttctaaataagttacaag 18703644  T
Q  225 acggtcatttagccactgatca 246  Q
    ||||||||||| ||||| ||||    
T  18703643 acggtcatttatccactaatca 18703622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 34878740 - 34878614
Alignment:
Q  110 ttgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctcttt 208  Q
    ||||||||||||||  ||||||||  ||||  |||| ||| ||||||||||||||||| ||||| ||| |||||||||| |||||  ||||||| | |||    
T  34878740 ttgtttgatacaatgaattacaatataaattctttcatattcatttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatattt 34878641  T
Q  209 ctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||| |||||||    
T  34878640 ctatataagttacaagacgatcattta 34878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 4075463 - 4075597
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||| ||||||||||||||||||| ||| |||||| |  ||| ||| |  |||||||||||||| ||| ||||||||||    
T  4075463 attacaatgaaaatcgtctgccatcaatttgttgaaaatgagctagaataacatcagtactaattgtgaaaagaacatctctttcaataaaagttacaag 4075562  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||| ||||    
T  4075563 ccgatcatttaaccattgatcacccattttattac 4075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 38417811 - 38417873
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa 188  Q
    |||||| ||||||| || |||||||||||||||||||||||  ||||||  || |||||||||    
T  38417811 attacagtgaaaattgtctcctatccatttgttgaaaatgatttaaaatagcaacattgttaa 38417873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 27447788 - 27447679
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| || || |||| |||| ||| ||| |||||||||| |||  || | |||| |||  ||||||| ||| |||||||||| |||||||    
T  27447788 attacaatgaaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaattttaaaagaacatttctctctatataagctacaaga 27447689  T
Q  226 cggtcattta 235  Q
    | || |||||    
T  27447688 cagtaattta 27447679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 41009797 - 41009696
Alignment:
Q  151 catttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatcc 249  Q
    |||||||||||| ||||  ||||| ||||||||  ||| ||||   ||||||||||||||||||||  ||| |||||| ||||||| ||| |||||| ||    
T  41009797 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacgatcatttaaccattgatcaccc 41009698  T
Q  250 at 251  Q
    ||    
T  41009697 at 41009696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 7681466 - 7681313
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||  ||||||| |||    
T  7681466 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatct 7681367  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||||||||| ||||||   ||||||| ||| |||||| |||||||||||    
T  7681366 ttctatataagttataagacgaatatttagctactaatcatctattttgttaca 7681313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 29866166 - 29866327
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaat--cgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctc 205  Q
    |||||||||||||||| ||||||||||||||  | | ||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||||||     
T  29866166 attgtttgatacaatacattacaatgaaaatttcatctccgatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatctt 29866265  T
Q  206 ttt-ctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||| || |||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  29866266 ttttctgtatatgttacaagacggtcatttagccattgatcacccattttgttacataggtt 29866327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 44873289 - 44873447
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| |||| |||| ||| |||||  ||||||||| ||    
T  44873289 attgtttgatacaatacattacaatgaaaatcgtcttctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttt 44873388  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||  ||||||||||| ||| ||||| ||||| |||| ||||||||||||| |||||    
T  44873389 tctatgcaagttacaagatggttatttaaccactaatcacccattttgttacataggtt 44873447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 10381424 - 10381577
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    |||||||||||| |||| |||||||| ||||| || || |||| ||||||||||||||| ||||||||||||||||||||| |||||  | ||||||| |    
T  10381424 cattgtttgatataatacattacaatcaaaattgtctcttatctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgt 10381523  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||| || ||| ||||||||||||||| ||||||| |||||    
T  10381524 ttatatataagttacaaaacagtcgtttagccactgatcacccattttattaca 10381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 24557007 - 24556854
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||  |||| || ||| |||| ||| |||||  |||| |  | |    
T  24557007 cattgtttgatacaatacattacaatgaaaatcgatttctatccatttgttgaaaatgaagtaaattgtcattattgctaattgttaaaagaaaactttt 24556908  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  24556907 ttatatataagttacaagacggtcatttagccaccaatcatccattttgttaca 24556854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 34697061 - 34696984
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacat 179  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||    
T  34697061 ttacctcattgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacat 34696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 11993776 - 11993693
Alignment:
Q  106 ctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||||| || |||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||    
T  11993776 ctcattgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaat 11993693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 45486287 - 45486153
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  45486287 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 45486188  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  45486187 ccgatcatttaaccattgatcacccattttgttac 45486153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 6802836 - 6802712
Alignment:
Q  135 aaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatt 233  Q
    ||||| || |||||| |||||||| |||||||  ||||||||| |||||| |||| ||||  | ||||||||||| ||||||||||||||||||| ||||    
T  6802836 aaaattgtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatataagttacaagacggacatt 6802737  T
Q  234 tagccactgatcatccattttgtta 258  Q
    ||||||| ||||| |||||||||||    
T  6802736 tagccaccgatcacccattttgtta 6802712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 32161494 - 32161343
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||| ||  |||||||| || ||||  ||||||||||||||| |||||| |||||| |  ||| |||||  |||||||||||    
T  32161494 cattgtttgatacaatacattataactaaaatcgtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctct 32161397  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||| |||||||||||| ||||||||| |||| || | |||||||||||||    
T  32161396 ttttatacaagttacaagacagtcatttagtcactaataacccattttgttaca 32161343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 29841271 - 29841119
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctc 205  Q
    |||||||||||| |||||| ||| ||||||||| || || |||| |||||||||||||| | |||||| ||| |  || |||| || |  ||||||| ||    
T  29841271 cattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaataacaacggtgctaatttttaaaagaacatatc 29841172  T
Q  206 tttctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    |||||||||||||||||||||  ||||||| ||||| |||||  |||||||||    
T  29841171 tttctatataagttacaagacactcatttaaccactaatcatttattttgtta 29841119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 43421633 - 43421764
Alignment:
Q  129 acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacg 227  Q
    ||||| |||||||| ||||||||||||||| ||||||| |||||||||||  |||  | || ||||  |||| ||  |||| ||||||||||||||||||    
T  43421633 acaattaaaatcgtctcctatccatttgtt-aaaatgaactaaaatgacaatattactgattgttaaaagaatattactttttatataagttacaagacg 43421731  T
Q  228 gtcatttagccactgatcatccattttgttaca 260  Q
    |||||| ||| ||||||||   |||||||||||    
T  43421732 gtcattcagcaactgatcacttattttgttaca 43421764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 31235911 - 31235824
Alignment:
Q  149 tccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcattta 235  Q
    |||||||||||||||||||||||||| ||||||||  ||| ||||   ||||||||||| ||||| || ||||||||||| |||||||    
T  31235911 tccatttgttgaaaatgagctaaaattacatcattactaattgtttcaagaacatctctctctatgtacgttacaagacgatcattta 31235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 33235575 - 33235693
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| | |   ||||||||||||||||||||||||||| ||| ||||| ||| || |   | |||||||||||||||| |||||||| ||    
T  33235575 ttacaatgaaaatcatctatcatccatttgttgaaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctataaaagttacacga 33235674  T
Q  226 cggtcatttagccactgat 244  Q
    || |||||||  |||||||    
T  33235675 cgttcatttaatcactgat 33235693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 11463188 - 11463243
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| ||||||    
T  11463188 attacaatgaaaatcgtctaccatccatttgttgaaaatgagctagaataacatca 11463243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 35990914 - 35990865
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgtt 158  Q
    |||||||||||||||| || |||||||||||||| ||||||| |||||||    
T  35990914 attgtttgatacaatacataacaatgaaaatcgtctcctatctatttgtt 35990865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 7388213 - 7388101
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || | || |||| |||||||||| | |||||||| | | ||||| |||| || |  | ||||| | |||||||||||||||||||    
T  7388213 attacaataaaaattgtcttctttccaattgttgaaaacgtgctaaaataaaaacattgctaatttttaaaaaaacatttatttctatataagttacaag 7388114  T
Q  225 acggtcatttagc 237  Q
    |||||||||||||    
T  7388113 acggtcatttagc 7388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 43421514 - 43421590
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||| ||||| | ||||||| |||||||| | ||||| ||||||||||||||| ||||||| ||| ||||    
T  43421514 cattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatgaactaaaattacaacatt 43421590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 108 - 266
Target Start/End: Complemental strand, 461430 - 461271
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||  | ||||| |||    
T  461430 cattgtttggtacaatacattacaatgaaaatcgtctcctatctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaataacatatct 461331  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || |||||||||||||| |||||| |||| ||||| |||||||||||||| ||| |||||    
T  461330 ttatatataagttacaaaacggtcgtttaaccactaatcatccattttgtcacataggtt 461271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 21883254 - 21883412
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    |||||||||||||| |||||||  ||||||||||||||||| | ||||||||||||||||||||||  ||||||||| ||||| ||| ||||  |||||     
T  21883254 ttacctcattgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaat 21883353  T
Q  201 atctctttctatataagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||| ||||||||||    
T  21883354 atctctttctatataagttacaacagggtcaattagtcactgatcatctattttgttac 21883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 6689212 - 6689363
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttc- 209  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||| |||||  ||| ||||||||||     
T  6689212 gtttgatacaatacattacaatgaaaatcgtctcctatccatttattgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttct 6689311  T
Q  210 -tatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
     ||||||||||| ||||| || ||| ||||| || ||||||| |||||||||    
T  6689312 atatataagttataagacagtaattcagccattgttcatccactttgttaca 6689363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 16461732 - 16461651
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||    
T  16461732 cattgtttgatacaatatattacaatgaaaattgtctcctattcatttgttgaaaatgagcttaaatgacatcattgttaat 16461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 266
Target Start/End: Complemental strand, 14607865 - 14607707
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca-ttgttaatgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||| |||||| || ||| |||||  | | ||| |||    
T  14607865 cattgtttgatacaatacattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacatcatttcttattgtta-aaaatcatatct 14607767  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||| ||| ||||||||| ||  |||||||| |||| |||||| |||| |||||| |||||    
T  14607766 ttcaatacaagttacaatacattcatttagtcactaatcatctatttggttacataggtt 14607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 18816933 - 18817067
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| |   ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  18816933 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 18817032  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  18817033 ccgatcatttaaccattgatcacccattttgttac 18817067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 24901708 - 24901836
Alignment:
Q  132 atgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtc 230  Q
    ||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| |||||||||| || ||    
T  24901708 atgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccgatc 24901807  T
Q  231 atttagccactgatcatccattttgttac 259  Q
    ||||| ||| |||||| ||||||||||||    
T  24901808 atttaaccattgatcacccattttgttac 24901836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 33704111 - 33704199
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagct-aaaatgacatcattgttaat 189  Q
    ||||||||||||||||||||||| |||||||| ||||| || | ||||| ||||||| |||||||||| ||||||||||||||||||||    
T  33704111 ttacctcattgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaat 33704199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 30705311 - 30705444
Alignment:
Q  128 tacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagac 226  Q
    |||||| |||||||| |  ||||||||||||||| ||||  |||||| || ||| ||||||| || |  |||| || ||||||| | || |||||||||     
T  30705311 tacaataaaaatcgtctattatccatttgttgaacatgatttaaaataacttcaatgttaattgtgaaaagaaaatatctttctgtgtatgttacaagat 30705410  T
Q  227 ggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||||||||||||||| | |||||||||||    
T  30705411 ggtcatttagccactgatcaccgattttgttaca 30705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 8150880 - 8150815
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaa 172  Q
    ||||||||||| ||||| | ||||||| |||||||| | |||||||||||||||||||||||||||    
T  8150880 cattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagctaaa 8150815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 35188047 - 35188102
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgtt 158  Q
    ||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||    
T  35188047 ttacctcattgtt-gatacaatacattacaatgaaaatcgtctcttatccatttgtt 35188102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 928 - 800
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | |||| |  ||||||||||||||||||| | ||||||||| |||| || |  ||||||| |||||||||||||||||||||    
T  928 attacaatgaaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgctaattgtcaaaagaacatatctttctatataagttacaag 829  T
Q  225 acggtcatttagccactgatcatccattt 253  Q
    | ||||||||||||| |||||||| ||||    
T  828 atggtcatttagccattgatcatcgattt 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 262 times since January 2019
Visitors: 3262