View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_high_13 (Length: 282)
Name: NF0440_2D_high_13
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 50626190 - 50626000
Alignment:
| Q |
92 |
attataggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagtatattatttggatgggtgacct |
191 |
Q |
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| T |
50626190 |
attataggtgtgatcattctagtactaatgcattagattccatcacaattttgtagttaagtgtgtttggacgagagtatattattaagatgggtgacct |
50626091 |
T |
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| Q |
192 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcgggatagttagattgttatataatgctttttt |
282 |
Q |
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| T |
50626090 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcggaatagttagattgttatataatgctttttt |
50626000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50631084 - 50630989
Alignment:
| Q |
1 |
tatttaaaaatttcttcattttgagtttaaaaattatacatacttcaattgtaaatacagatattcatatctcatataatggtcatatttcattatag |
98 |
Q |
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| T |
50631084 |
tatttaaaaatttcttcattttgagtttaaaaatta--catacttcaattgtaaatacagatattcatatctcatataatggtcatatttcattatag |
50630989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 24620882 - 24620777
Alignment:
| Q |
97 |
aggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagta-tattatttggatgggtgacctcctg |
195 |
Q |
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| T |
24620882 |
aggtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttgggcgagagtagtactagntggatgggtgacctcctg |
24620783 |
T |
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| Q |
196 |
cgaagt |
201 |
Q |
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||||| |
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| T |
24620782 |
ggaagt |
24620777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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