View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_high_14 (Length: 247)

Name: NF0440_2D_high_14
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_high_14
NF0440_2D_high_14
[»] chr7 (1 HSPs)
chr7 (1-244)||(27153260-27153503)
[»] chr5 (2 HSPs)
chr5 (29-140)||(32874452-32874563)
chr5 (122-155)||(5864733-5864766)
[»] chr6 (2 HSPs)
chr6 (1-153)||(27852934-27853086)
chr6 (2-184)||(12645929-12646111)
[»] chr4 (2 HSPs)
chr4 (2-159)||(14307800-14307957)
chr4 (2-81)||(14291751-14291830)
[»] chr2 (3 HSPs)
chr2 (28-84)||(16322492-16322548)
chr2 (29-81)||(14653728-14653780)
chr2 (36-135)||(42403214-42403313)
[»] chr1 (3 HSPs)
chr1 (29-81)||(50236616-50236668)
chr1 (2-81)||(50451915-50451994)
chr1 (56-138)||(1525041-1525123)
[»] chr8 (2 HSPs)
chr8 (2-45)||(13030221-13030264)
chr8 (29-81)||(23132633-23132685)
[»] scaffold0214 (1 HSPs)
scaffold0214 (29-81)||(9011-9063)
[»] chr3 (2 HSPs)
chr3 (2-62)||(11889809-11889869)
chr3 (29-81)||(11897195-11897247)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27153260 - 27153503
Alignment:
Q  1 tatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||    
T  27153260 tatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagattcctcctttcaagccttatcatggccttcggcaaggagaccatctc 27153359  T
Q  101 gctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatgatgttaatcaaggtacctgggacaccatctgtctctctacaaacg 200  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  27153360 tctccctatttatttatcctttgtatggaaaagctctccattgccatcaacaatgatgttaatcaaggtacttgggacatcatctgtctctctacaaacg 27153459  T
Q  201 accccaaaatttctcaccttctctttgcagatgatgtccatctc 244  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  27153460 acccctaaatttctcaccttctctttgcaaatgatgtccttctc 27153503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 32874563 - 32874452
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctcgctccctatttatttatcctttatatgg 128  Q
    |||||||| || |||||||| ||| |||||||||||||||||||||||||||| || | ||||||||  ||| ||||||||||||| ||| |||  ||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  129 aaaagctctcca 140  Q
    ||||||||||||    
T  32874463 aaaagctctcca 32874452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 5864766 - 5864733
Alignment:
Q  122 tatatggaaaagctctccattgccatcaacaatg 155  Q
    |||||||||||||||||| |||||||||||||||    
T  5864766 tatatggaaaagctctcccttgccatcaacaatg 5864733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27853086 - 27852934
Alignment:
Q  1 tatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctc 100  Q
    |||||||||||| |||||||| | ||| ||||| || ||||| || || || |||||| ||||||||||||||||||| ||  | | ||| |||| | |     
T  27853086 tatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggacccttta 27852987  T
Q  101 gctccctatttatttatcctttatatggaaaagctctccattgccatcaacaa 153  Q
     |||| || ||||| ||||||| ||||||||||||||||||||||||||||||    
T  27852986 tctccttacttattcatcctttgtatggaaaagctctccattgccatcaacaa 27852934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 12646111 - 12645929
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctcg 101  Q
    |||||||||||||| || || |||||||||||||| ||||||||||| |  ||||||| ||||||||| |||||||| ||  ||  ||| || |  |||     
T  12646111 atgcattgtgtcacttcatccactctttctatcctttggaatgggaacattatgcctcttttcaagccatctcatggtctcaggtaaggggatcccctct 12646012  T
Q  102 ctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatgatgttaatcaaggtacctgggacaccatc 184  Q
    | || ||||| ||||| |||| ||||||||||||||| ||| | ||||||||||  ||| | |||||  |||||||| |||||    
T  12646011 ccccttatttgtttattctttgtatggaaaagctctctatttctatcaacaatgcagttcagcaaggagcctgggaccccatc 12645929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 14307800 - 14307957
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctcg 101  Q
    ||||||||||||||||| || ||||| ||||| || ||||||||||| ||||||| |||||| |||||||| ||||||||  | | |||||| | || |     
T  14307800 atgcattgtgtcacctcttccactctctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccct 14307899  T
Q  102 ctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatgatgt 159  Q
    | || ||  | || ||| ||| ||||||||| || |||||| ||||||||||||||||    
T  14307900 cgccttaccttttcatcatttgtatggaaaaactttccatttccatcaacaatgatgt 14307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 14291751 - 14291830
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    ||||||||||||||||| || ||||| ||||| || ||||||||||| ||||||| |||||| |||||||| ||||||||    
T  14291751 atgcattgtgtcacctcttccactctctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcct 14291830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 16322492 - 16322548
Alignment:
Q  28 ttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcg 84  Q
    |||| ||||||||||||| || ||||||||||||||||||||  |||||||||||||    
T  16322492 ttctctcctatggaatggaaacaagatgcctcctttcaagcccactcatggccttcg 16322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 14653780 - 14653728
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    ||||| || ||||||||||| ||| |||| |||||||||||||||||||||||    
T  14653780 tctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 42403313 - 42403214
Alignment:
Q  36 tatggaatgggaataagatgcctcctttcaagccttctcatggccttcggccaggagaccatctcgctccctatttatttatcctttatatggaaaagct 135  Q
    ||||||| || ||||| |||||||||||||||||  |||||||||| |||| ||| |||| |||| | || ||| ||||||| || |  |||||||||||    
T  42403313 tatggaacggaaataaaatgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagct 42403214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 50236668 - 50236616
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    |||||| ||||||| ||||| |||||||| |||||||||||| ||||||||||    
T  50236668 tctatcttatggaacgggaacaagatgccccctttcaagcctactcatggcct 50236616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 50451915 - 50451994
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    |||||||||||||||||||| ||| | |||||| |||||||||| || || ||||| | |||||| ||| | ||||||||    
T  50451915 atgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcct 50451994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 1525041 - 1525123
Alignment:
Q  56 cctcctttcaagccttctcatggccttcggccaggagaccatctcgctccctatttatttatcctttatatggaaaagctctc 138  Q
    ||||||||||||||||| || || ||||||| ||| ||||  ||  ||||||| |||||||| || | |||||||||||||||    
T  1525041 cctcctttcaagccttcccacggtcttcggcaaggtgacccgctatctccctacttatttattctctgtatggaaaagctctc 1525123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 13030221 - 13030264
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgg 45  Q
    ||||||||||||||||| || |||||||||||||| ||||||||    
T  13030221 atgcattgtgtcacctcttcaactctttctatcctttggaatgg 13030264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 23132685 - 23132633
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    ||||| || ||||| ||||| ||| |||| |||||||||||||||||||||||    
T  23132685 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 9011 - 9063
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    ||||| || |||||||| |||| | ||||||||||| ||||||||||||||||    
T  9011 tctattctttggaatggtaataggctgcctcctttcgagccttctcatggcct 9063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 11889869 - 11889809
Alignment:
Q  2 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctt 62  Q
    ||||| ||||||||||| || ||| | || ||||||||||||||||| || ||||||||||    
T  11889869 atgcactgtgtcacctcatccactttctccatcctatggaatgggaacaaaatgcctcctt 11889809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 11897195 - 11897247
Alignment:
Q  29 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 81  Q
    ||||| || ||||| ||||| ||| |||| |||||||||||||||||||||||    
T  11897195 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 44 times since January 2019
Visitors: 3264