View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_high_19 (Length: 206)

Name: NF0440_2D_high_19
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_high_19
NF0440_2D_high_19
[»] chr2 (1 HSPs)
chr2 (18-199)||(8020980-8021161)
[»] chr3 (17 HSPs)
chr3 (29-176)||(28151822-28151969)
chr3 (19-196)||(17744306-17744484)
chr3 (19-196)||(19045626-19045804)
chr3 (27-175)||(11421393-11421541)
chr3 (51-176)||(28037612-28037737)
chr3 (32-169)||(8539081-8539218)
chr3 (21-95)||(27430796-27430870)
chr3 (19-91)||(27920463-27920535)
chr3 (103-176)||(27458741-27458814)
chr3 (76-172)||(26139089-26139185)
chr3 (76-175)||(28162792-28162891)
chr3 (104-176)||(11421160-11421232)
chr3 (50-94)||(18076983-18077027)
chr3 (76-148)||(26110202-26110274)
chr3 (72-148)||(26127278-26127354)
chr3 (72-148)||(26177328-26177404)
chr3 (76-148)||(26204494-26204566)
[»] scaffold0922 (1 HSPs)
scaffold0922 (19-176)||(1911-2068)
[»] scaffold1142 (1 HSPs)
scaffold1142 (86-176)||(531-621)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 8021161 - 8020980
Alignment:
Q  18 aaaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021161 aaaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttggg 8021062  T
Q  118 aaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgtgaaaaggtgagaaagaagaagg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  8021061 aaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgggaaagaagaagg 8020980  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 28151969 - 28151822
Alignment:
Q  29 aataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgct 128  Q
    ||||||||||||| || || |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| ||||| | |||||| | ||    
T  28151969 aataaaataccttcagaaggctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcct 28151870  T
Q  129 caatatttgatcttactttcatgacatcgtcatcatttagagaaactg 176  Q
    || ||||||| ||| ||||||||||||  |||||||||||||||||||    
T  28151869 cagtatttgagcttgctttcatgacattatcatcatttagagaaactg 28151822  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 17744306 - 17744484
Alignment:
Q  19 aaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttggga 118  Q
    ||||||| ||||||||||||||  ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || |||    
T  17744306 aaaatgaagcaataaaatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttagga 17744405  T
Q  119 aactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact-gtgaaaaggtgagaaagaaga 196  Q
    || || | |||||||||||| ||||||||||  ||||| |||||||||||||||||| |  ||| ||||||||||||||    
T  17744406 aattgatcctcaatatttgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaaga 17744484  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 19045626 - 19045804
Alignment:
Q  19 aaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttggga 118  Q
    ||||||| ||||||||||||||  ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || |||    
T  19045626 aaaatgaagcaataaaatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttagga 19045725  T
Q  119 aactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact-gtgaaaaggtgagaaagaaga 196  Q
    || || | |||||||||||| ||||||||||  ||||| |||||||||||||||||| |  ||| ||||||||||||||    
T  19045726 aattgatcctcaatatttgagcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaaga 19045804  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 11421541 - 11421393
Alignment:
Q  27 gcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttg 126  Q
    ||||||||||||||| |  ||  ||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||| ||| | ||||||||||     
T  11421541 gcaataaaataccttcaacaggttttaaaggatactgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttc 11421442  T
Q  127 ctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 175  Q
    |||| ||||||||||||||||| ||| | | ||||||||| ||||||||    
T  11421441 ctcagtatttgatcttactttcttgaaagcatcatcatttcgagaaact 11421393  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 28037737 - 28037612
Alignment:
Q  51 ttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcat 150  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||| || ||||| ||||| | |||||| | |||||||||||| |||||||||||    
T  28037737 ttgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatttgaacttactttcat 28037638  T
Q  151 gacatcgtcatcatttagagaaactg 176  Q
    |||||  ||||||||| || ||||||    
T  28037637 gacattatcatcatttggataaactg 28037612  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 8539081 - 8539218
Alignment:
Q  32 aaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaa 131  Q
    |||||||||| || || |||||||||| ||||||||  |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||  | || ||    
T  8539081 aaaataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaa 8539180  T
Q  132 tatttgatcttactttcatgacatcgtcatcatttaga 169  Q
    ||||||| |||||||||||| || | ||||||||||||    
T  8539181 tatttgagcttactttcatggcaacatcatcatttaga 8539218  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 27430796 - 27430870
Alignment:
Q  21 aatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaa 95  Q
    ||||| ||||||||||| ||| || || ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27430796 aatgaagcaataaaataacttcagcaggctttgaaggacactgagatgcaatataagagggtcttgatttggaaa 27430870  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27920535 - 27920463
Alignment:
Q  19 aaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttg 91  Q
    |||||||  |||||||||||||| || || |||||||||| |||||||| |||||||||||| ||||||||||    
T  27920535 aaaatgaaacaataaaataccttcagaaggctttgaaggaaactgagatgcaatagaagaggttcttgatttg 27920463  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 27458741 - 27458814
Alignment:
Q  103 ttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactg 176  Q
    |||||| || || |||||||| | |||||||||||| |||||||| |||||| | |||||||||||||||||||    
T  27458741 ttcatcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactg 27458814  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 26139089 - 26139185
Alignment:
Q  76 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaa 172  Q
    ||||||| | ||||| ||||||| ||| ||||| ||| | |||||||||| |||||||||||| ||||||||| ||| |   |||||||||||||||    
T  26139089 agagggtttagatttagaaactattatatcatcatccataggaaactgttcctcaatatttgagcttactttcttgaaagaatcatcatttagagaa 26139185  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 28162891 - 28162792
Alignment:
Q  76 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 175  Q
    ||||||| | ||||||||||||| ||| |||||   ||| ||||| |||| |||||||||||| ||||||||| ||| | | ||||||||| ||||||||    
T  28162891 agagggtttagatttggaaactattatatcatcaatcttaggaaattgttcctcaatatttgagcttactttcttgaaagcatcatcatttcgagaaact 28162792  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 11421232 - 11421160
Alignment:
Q  104 tcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactg 176  Q
    ||||| ||||| || || ||||||||||||||||  ||| ||||||||||| | ||||||||||||| |||||    
T  11421232 tcatcatccttaggtaaatgttgctcaatatttgtgcttgctttcatgacagcatcatcatttagagcaactg 11421160  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 18076983 - 18077027
Alignment:
Q  50 tttgaaggacactgagattcaatagaagagggtcttgatttggaa 94  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18076983 tttgaaggaaactgagatgcaatagaagagggtcgtgatttggaa 18077027  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 26110202 - 26110274
Alignment:
Q  76 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 148  Q
    ||||||| | ||||||||||||| ||| ||||| ||||| | ||| |||| |||||||||||| |||||||||    
T  26110202 agagggtttagatttggaaactattatatcatcatccttagaaaattgttcctcaatatttgagcttactttc 26110274  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 26127278 - 26127354
Alignment:
Q  72 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 148  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| |||||||||||| |||||||||    
T  26127278 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaatatttgagcttactttc 26127354  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 26177328 - 26177404
Alignment:
Q  72 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 148  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| ||||||| |||| |||||||||    
T  26177328 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaataattgagcttactttc 26177404  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 26204494 - 26204566
Alignment:
Q  76 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 148  Q
    ||||||| | ||||||||||||| ||| ||| | || |||| ||| | || ||||||||||||||||||||||    
T  26204494 agagggtttagatttggaaactattatatcaccatcattggtaaaattttcctcaatatttgatcttactttc 26204566  T

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Target: scaffold0922 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2068 - 1911
Alignment:
Q  19 aaaatgatgcaataaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttggga 118  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||| |||||| | || |  ||||||||||||||||||||||||| |||||  ||    
T  2068 aaaatgaagcaataaaataccttgagcaggctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatatttcatcatccttaaga 1969  T
Q  119 aactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactg 176  Q
    || || | |||||||| ||| ||||||||||||| | | |||||||||| | ||||||    
T  1968 aattgatcctcaatatctgagcttactttcatgatagcatcatcatttaaaaaaactg 1911  T

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Target: scaffold1142 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 621 - 531
Alignment:
Q  86 gatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactg 176  Q
    |||| ||||| || ||||||||| ||||| |||||||||| |||||||||| | ||||||||||||||| | || |||||||||| |||||    
T  621 gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttagaggaactg 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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