View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440_2D_high_5 (Length: 457)
Name: NF0440_2D_high_5
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 4903556 - 4903995
Alignment:
| Q |
1 |
aagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4903556 |
aagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcaacacatatttttcttc |
4903655 |
T |
|
| Q |
101 |
attgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4903656 |
attgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaa |
4903755 |
T |
|
| Q |
201 |
tggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaac |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903756 |
tggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaac |
4903855 |
T |
|
| Q |
301 |
aatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatg |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4903856 |
aatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatg |
4903955 |
T |
|
| Q |
401 |
agtggaattggaatccgaaggattgtttgttgcggtgatg |
440 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4903956 |
agtggaattggaatctgaaggattgtttgttgcggtgatg |
4903995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 289
Target Start/End: Original strand, 1557161 - 1557320
Alignment:
| Q |
130 |
aagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgca |
229 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| || || |||||||||||||||||||||||||||| ||| | || | ||||||||| | || | |
|
|
| T |
1557161 |
aagcttatggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcgga |
1557260 |
T |
|
| Q |
230 |
ggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgaca |
289 |
Q |
| |
|
||||| || | ||||||||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
1557261 |
agggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgaca |
1557320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 434
Target Start/End: Original strand, 1557359 - 1557465
Alignment:
| Q |
328 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
427 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
428 |
tgttgcg |
434 |
Q |
| |
|
||||||| |
|
|
| T |
1557459 |
tgttgcg |
1557465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
268 |
atttggaaagcgaggaatgacagaattttcaacaatg |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 22154001 - 22153562
Alignment:
| Q |
1 |
aagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| | ||||||||||||||| |
|
|
| T |
22154001 |
aagatcaaccttgctataaggaactcgctcccaccggatagctctcttcagtgtgtttggtgcaacaattcgattaaagatttaacacatctttttcttc |
22153902 |
T |
|
| Q |
101 |
attgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
22153901 |
attgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaa |
22153802 |
T |
|
| Q |
201 |
tggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaac |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22153801 |
tggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaac |
22153702 |
T |
|
| Q |
301 |
aatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatg |
400 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22153701 |
aatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatg |
22153602 |
T |
|
| Q |
401 |
agtggaattggaatccgaaggattgtttgttgcggtgatg |
440 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22153601 |
agtggaattggaatccgaaggtttgtttgttgcggtgatg |
22153562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 22209916 - 22209477
Alignment:
| Q |
1 |
aagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| | ||||||||||||||| |
|
|
| T |
22209916 |
aagatcaaccttgctataaggaactcgctcccaccggatagctctcttcagtgtgtttggtgcaacaattcgattaaagatttaacacatctttttcttc |
22209817 |
T |
|
| Q |
101 |
attgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
22209816 |
attgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaa |
22209717 |
T |
|
| Q |
201 |
tggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaac |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22209716 |
tggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaac |
22209617 |
T |
|
| Q |
301 |
aatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatg |
400 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22209616 |
aatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatg |
22209517 |
T |
|
| Q |
401 |
agtggaattggaatccgaaggattgtttgttgcggtgatg |
440 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22209516 |
agtggaattggaatccgaaggtttgtttgttgcggtgatg |
22209477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 41450779 - 41450828
Alignment:
| Q |
155 |
attttttaattcctcctaatctgtttattatgtgggaatgttggaatggt |
204 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
41450779 |
attttttaattcctccaaatttgtttattctttggcaatgttggaatggt |
41450828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 438
Target Start/End: Original strand, 53562135 - 53562433
Alignment:
| Q |
136 |
atggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtg |
235 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||||||||||||||||| | |||| ||||| ||| || | |||| |
|
|
| T |
53562135 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtg |
53562234 |
T |
|
| Q |
236 |
gtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatc |
335 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | |
|
|
| T |
53562235 |
ttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----c |
53562330 |
T |
|
| Q |
336 |
tgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcgg |
435 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| ||||| |
|
|
| T |
53562331 |
agtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcgg |
53562430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 122 - 440
Target Start/End: Complemental strand, 38185584 - 38185266
Alignment:
| Q |
122 |
tctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaa |
221 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |||||| ||||||| || ||||||||||| | |||||||||||||||| | | | ||| |||||||| |
|
|
| T |
38185584 |
tctggcgtgagcttatggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaa |
38185485 |
T |
|
| Q |
222 |
gctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggag |
321 |
Q |
| |
|
| | | | ||| | || | ||||||||||| || |||||||| || |||||||| |||||||| | || ||| || |||| ||| ||| ||| |
|
|
| T |
38185484 |
gatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgag |
38185385 |
T |
|
| Q |
322 |
gagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaagg |
421 |
Q |
| |
|
| ||| |||||||| ||||||||||| | |||||||||| ||| ||||| | || | || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38185384 |
gcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaagg |
38185285 |
T |
|
| Q |
422 |
attgtttgttgcggtgatg |
440 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
38185284 |
aatgcttgttgcggtgatg |
38185266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 304
Target Start/End: Complemental strand, 34821538 - 34821358
Alignment:
| Q |
124 |
tggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagc |
223 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| || |||| ||||| ||| ||||||| |||||| | ||||||||||||| | || ||||||||| |
|
|
| T |
34821538 |
tggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaaga |
34821439 |
T |
|
| Q |
224 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg |
304 |
Q |
| |
|
| || | ||| | || | |||||||| || || |||||||| || ||||||||||||||||| | ||||| ||||||| |
|
|
| T |
34821438 |
ttcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatg |
34821358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
338 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
372 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1698 times since January 2019
Visitors: 3234