View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_high_7 (Length: 357)

Name: NF0440_2D_high_7
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_high_7
NF0440_2D_high_7
[»] chr8 (4 HSPs)
chr8 (1-278)||(4903301-4903580)
chr8 (278-338)||(9336312-9336372)
chr8 (150-257)||(1556798-1556905)
chr8 (3-70)||(1556987-1557054)
[»] chr7 (4 HSPs)
chr7 (58-278)||(22154013-22154235)
chr7 (58-278)||(22209928-22210150)
chr7 (1-38)||(22153977-22154014)
chr7 (1-38)||(22209892-22209929)
[»] chr4 (2 HSPs)
chr4 (9-209)||(34821645-34821847)
chr4 (79-210)||(53561813-53561944)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 4903580 - 4903301
Alignment:
Q  1 agtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacgg--ccgggctcttccaaatatg 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4903580 agtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatg 4903481  T
Q  99 cgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctct 198  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4903480 cgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctca 4903381  T
Q  199 tccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903380 tccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 4903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 9336312 - 9336372
Alignment:
Q  278 agtccctggtataagtatacgtgtcatgtattcattattgagggatatttggttaggatat 338  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9336312 agtctctggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggatat 9336372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
Q  150 tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc 249  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||  |||||| |||| |||| ||  | ||  |||| ||||||    
T  1556905 tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc 1556806  T
Q  250 aaatcctc 257  Q
    ||||||||    
T  1556805 aaatcctc 1556798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
Q  3 tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac 70  Q
    ||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||    
T  1557054 tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac 1556987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 22154013 - 22154235
Alignment:
Q  58 taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttc 155  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  22154013 taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttc 22154112  T
Q  156 caatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcc 255  Q
    |||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  22154113 caatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatct 22154212  T
Q  256 tcgagcaaatcatgaagaagtaa 278  Q
    || | |||||| |||||||||||    
T  22154213 tctaacaaatcgtgaagaagtaa 22154235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 22209928 - 22210150
Alignment:
Q  58 taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttc 155  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  22209928 taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttc 22210027  T
Q  156 caatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcc 255  Q
    |||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  22210028 caatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatct 22210127  T
Q  256 tcgagcaaatcatgaagaagtaa 278  Q
    || | |||||| |||||||||||    
T  22210128 tctaacaaatcgtgaagaagtaa 22210150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22153977 - 22154014
Alignment:
Q  1 agtttcttatagcaaggttgatctttgttgggattcta 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  22153977 agttccttatagcaaggttgatctttgttgggattcta 22154014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22209892 - 22209929
Alignment:
Q  1 agtttcttatagcaaggttgatctttgttgggattcta 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  22209892 agttccttatagcaaggttgatctttgttgggattcta 22209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
Q  9 atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || |  ||||  ||||||| ||| ||||  || |    
T  34821645 atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca 34821744  T
Q  107 ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct 206  Q
    ||||||||     | | | ||||   ||  ||   | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||    
T  34821745 ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct 34821844  T
Q  207 cca 209  Q
    |||    
T  34821845 cca 34821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
Q  79 gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta 178  Q
    ||||| |||||||||||||||   || |||||||||   ||  ||||||| |  || ||||| | |||||||||||||||||| |||||||| ||||| |    
T  53561944 gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa 53561845  T
Q  179 ccgaaaaagcaccttcctcttccaacctccaa 210  Q
    ||||||||| ||| ||||||||||| ||||||    
T  53561844 ccgaaaaagtaccgtcctcttccaaactccaa 53561813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 25 times since January 2019
Visitors: 3252