View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_12 (Length: 365)
Name: NF0440_2D_low_12
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 6968690 - 6969054
Alignment:
| Q |
1 |
gaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggagaaacttgatcaagctttgattcgtcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968690 |
gaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggagaaacttgatcaagctttgattcgtcgt |
6968789 |
T |
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| Q |
101 |
ggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968790 |
ggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcg |
6968889 |
T |
|
| Q |
201 |
agacgattcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6968890 |
agacgattcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgaggaagatgttgaggcatcatt |
6968989 |
T |
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| Q |
301 |
ggagaggttgatccaagcacttagaacctccaaggaagaagctgagatgaaagccaagaaagaag |
365 |
Q |
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| T |
6968990 |
ggagaggttgatccaagcacttagaacctccaaggaagaagctgagatgaaagccaagaaagaag |
6969054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 73 - 365
Target Start/End: Complemental strand, 1000502 - 1000205
Alignment:
| Q |
73 |
gaaacttgatcaagctttgattcgtcgtggacgaatggacatgcat----attgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaa |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
1000502 |
gaaacttgatcaagctttgattcgtcgtggacgaatggacatgcatgcatattgagttgtcttattgtggttttgatggattcaaaatgctagcaatgag |
1000403 |
T |
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| Q |
169 |
ttatctgagtattgaatctcatcctttgttcgagacgattcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcct |
268 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
1000402 |
ttatctgagtattgaatctcatcctttgttcaagacggttcgatgcttgttggaagagaccaacataactcaggctgatgttgctgaaaacttgatgcct |
1000303 |
T |
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| Q |
269 |
aaggtagctgatgaagatgttgaggcatcattggagagg--ttgatccaagcacttagaacctccaaggaagaagctgagatgaaagccaagaaagaag |
365 |
Q |
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| T |
1000302 |
aaggtagct-atgaagatgttgaggcatcattggagaggctttgatccaagcacttagaacctctaaggaagaggctgagatgaaagctaagaaagaag |
1000205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 2177981 - 2178306
Alignment:
| Q |
1 |
gaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggagaaacttgatcaagctttgattcgtcgt |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||| ||||| ||| |||| |
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| T |
2177981 |
gaatttcattgatgggatttggtcagctagtactggtgagaggttaattatattcactactaactatgcggagaaacttgatcatgctttaatttgtcga |
2178080 |
T |
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| Q |
101 |
ggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcg |
200 |
Q |
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||| |||||||||||| ||| || ||| |||| ||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||| |
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| T |
2178081 |
ggaagaatggacatgcttatcgaattgccttattgttgttttgatggattcaaaatgttggcaacgaagtatctgagtcttgaatctcattttttgttcg |
2178180 |
T |
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| Q |
201 |
agacgattcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcatt |
300 |
Q |
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| T |
2178181 |
acaagattgcatgcttgttggtagagactaatatgacaccagctgatgttgctgaaaatttgatgccaaaggtagataatgaagatgttgcgactccatt |
2178280 |
T |
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| Q |
301 |
ggagaggttgatccaagcacttagaa |
326 |
Q |
| |
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| ||||||||| ||||||||||||| |
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| T |
2178281 |
gttgaggttgattcaagcacttagaa |
2178306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 51316361 - 51316041
Alignment:
| Q |
26 |
gctagtactggtgagagattgattatatttactactaactatgtggagaaacttgatcaagctttgattcgtcgtggacgaat-----ggacatgcatat |
120 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||| | || |||| ||| |||||||| |
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| T |
51316361 |
gctagtactcatgagagattgattatatttactactaactatgtggagaaacttaatcatgctctaattcgtagatgaagaatataatggatatgcatat |
51316262 |
T |
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| Q |
121 |
tgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacgattcaacgcttgttg |
220 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| | |||||||| |
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| T |
51316261 |
tgaattgtcttattgtggttttgatggattcaaaatgttggcaatgaattatctgagtcttgaatctcattttttgctcgagacgattagatgcttgttg |
51316162 |
T |
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| Q |
221 |
gaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcattggagaggttgatcc--aagc |
318 |
Q |
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||||||||||| ||||| || |||||||||||| |||||||||||||||||||| || |||||||||||||| | ||||||||||||||||| | |||| |
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| T |
51316161 |
gaagagactaatatgacaccagctgatgttgctaaaaacttgatgcctaaggtatctaatgaagatgttgagacctcattggagaggttgatacaaaagc |
51316062 |
T |
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| Q |
319 |
acttagaacctccaaggaaga |
339 |
Q |
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||||||| ||| |||||||| |
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| T |
51316061 |
ccttagaagctctaaggaaga |
51316041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 2842791 - 2842843
Alignment:
| Q |
215 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
267 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||||| |||||||| |
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| T |
2842791 |
ttgttggaagagactaatatgacacctgctgatgttgctgaaaatttgatgcc |
2842843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 2829385 - 2829437
Alignment:
| Q |
215 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
267 |
Q |
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||||||||| ||||||| ||||| || ||||||||||||||||| |||||||| |
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| T |
2829385 |
ttgttggaaaagactaatatgacacctgctgatgttgctgaaaatttgatgcc |
2829437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 2832829 - 2832777
Alignment:
| Q |
215 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
267 |
Q |
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||||||| ||||||||| ||||| || |||||||||||||| || |||||||| |
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| T |
2832829 |
ttgttgggagagactaatatgacacctgctgatgttgctgagaatttgatgcc |
2832777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 2909536 - 2909484
Alignment:
| Q |
215 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
267 |
Q |
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||||||| ||||||||| ||||| || |||||||||||||| || |||||||| |
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| T |
2909536 |
ttgttgggagagactaatatgacacctgctgatgttgctgagaatttgatgcc |
2909484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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