View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_low_13 (Length: 359)

Name: NF0440_2D_low_13
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_low_13
NF0440_2D_low_13
[»] chr3 (12 HSPs)
chr3 (24-288)||(4536737-4536997)
chr3 (86-212)||(4826398-4826529)
chr3 (142-207)||(4835145-4835210)
chr3 (142-212)||(4845767-4845837)
chr3 (142-220)||(4860735-4860813)
chr3 (142-212)||(4871526-4871596)
chr3 (142-220)||(4880742-4880820)
chr3 (142-207)||(4841831-4841896)
chr3 (142-212)||(4852474-4852544)
chr3 (142-212)||(4856445-4856515)
chr3 (142-212)||(4878180-4878250)
chr3 (129-219)||(4810356-4810442)
[»] chr7 (1 HSPs)
chr7 (142-213)||(21703822-21703893)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 4536997 - 4536737
Alignment:
Q  24 aatgattattgaaatataataaatgtctttgatagaaactttacaccttcatcaagatttcatctctaactactataaaacctg-taattcgctatgtat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||| | |||||||||||||    
T  4536997 aatgattattgaaatataataaatgtctttgatagaaactttacaccttcatcaaattttc--ctctaactactataaaacctgattattcgctatgtat 4536900  T
Q  123 tatatgcaccaacactaaaatcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttgttgctcaagg 222  Q
    ||||||||||||||||||| ||||||||||||||||||   || |||| | ||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  4536899 tatatgcaccaacactaaagtcacttcttaaaatggct---tcattttacctatccttactattgttgttccttgctgcccttatccttgtttctcaagg 4536803  T
Q  223 gcttggtgatttatttgtacctatatataaacctccaatttacaatcccccaatttacaagcctcc 288  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||    ||||| ||||||||||||    
T  4536802 gcttgctgatttattagtacctatatataaacctccaatttacaccttcccaaattacaagcctcc 4536737  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 4826529 - 4826398
Alignment:
Q  86 tctctaactactataaaacctgt-aattcgctatgtattatatgcaccaacactaaaa------tcacttcttaaaatggctaattcctttttcttatcc 178  Q
    |||||||||| ||||||||| || || || |||||||||||  ||||||||||||| |      |||||||||||| |||||||||||||||||||||||    
T  4826529 tctctaactagtataaaaccagttaactctctatgtattat--gcaccaacactaataataatatcacttcttaaagtggctaattcctttttcttatcc 4826432  T
Q  179 ttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||| || | ||||||||||||||||| ||||    
T  4826431 ttgctagtggtattccttgctgctcttatgcttg 4826398  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 4835210 - 4835145
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttat 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || | |||||||||||||||||    
T  4835210 atcacttcttaaaatggctaaatcctttttcttatccttgctagtggtattccttgctgctcttat 4835145  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 4845837 - 4845767
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||| |||| ||||    
T  4845837 atcacttcttaaaatggctaattcctttttcttatccttattagtgttattccttgctgcttttatgcttg 4845767  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 4860813 - 4860735
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttgttgctcaa 220  Q
    ||||||||||||||||||||| |||||||||||||||||  || |||| |||||||||||||||||  ||||| |||||    
T  4860813 atcacttcttaaaatggctaaatcctttttcttatccttattagtgttattccttgctgctcttatgtttgttcctcaa 4860735  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 4871596 - 4871526
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||| |||| ||||    
T  4871596 atcacttcttaaaatggctaattcctttttcttatccttattagtgttattccttgctgcttttatgcttg 4871526  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 4880820 - 4880742
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttgttgctcaa 220  Q
    ||||||||||||||||||||| |||||||||||||||||  || |||| |||||||||||||||||  ||||| |||||    
T  4880820 atcacttcttaaaatggctaaatcctttttcttatccttattagtgttattccttgctgctcttatgtttgttcctcaa 4880742  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 4841896 - 4841831
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttat 207  Q
    ||||||||||||||||||||| |||||||||||||||||  || |||| |||||||||||||||||    
T  4841896 atcacttcttaaaatggctaaatcctttttcttatccttattagtgttattccttgctgctcttat 4841831  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 4852544 - 4852474
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||||||||||||||||||||| ||||||||||||||  || |||| |||||||||||| |||| ||||    
T  4852544 atcacttcttaaaatggctaattcatttttcttatccttattagtgttattccttgctgcttttatgcttg 4852474  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 4856515 - 4856445
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||||||||||||||||||||| ||||||||||||||  || |||| |||||||||||| |||| ||||    
T  4856515 atcacttcttaaaatggctaattcatttttcttatccttattagtgttattccttgctgcttttatgcttg 4856445  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 4878250 - 4878180
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttg 212  Q
    |||||||||||||||||||||||| ||||||||||||||  || |||| |||||||||||| |||| ||||    
T  4878250 atcacttcttaaaatggctaattcatttttcttatccttattagtgttattccttgctgcttttatgcttg 4878180  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 4810442 - 4810356
Alignment:
Q  129 caccaacactaaaatcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttgttgctca 219  Q
    |||||||||||||||||||  ||| |||| ||   ||||||||||||| ||| || ||||||||||||||| ||||||| |||||| ||||    
T  4810442 caccaacactaaaatcactatttacaatgact---tcctttttcttatacttact-ttgttgttccttgcttctcttatgcttgttcctca 4810356  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 21703822 - 21703893
Alignment:
Q  142 atcacttcttaaaatggctaattcctttttcttatccttgctattgttgttccttgctgctcttatccttgt 213  Q
    |||||||||||||||||||||||| |||||||| ||||| ||| || | ||||  ||||||||||| |||||    
T  21703822 atcacttcttaaaatggctaattcttttttcttgtccttactagtggtattccacgctgctcttatgcttgt 21703893  T

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