View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_16 (Length: 356)
Name: NF0440_2D_low_16
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 44265677 - 44265983
Alignment:
| Q |
17 |
catcacaaccctgcattttcatttttt-aatccataaataaccaaatataataagtttggatttccaaagttagctaaacagattcatgctaatttaatc |
115 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44265677 |
catcacaaccctgcattttcatttttttaatccataaataaccaaatataataagtttggatttccaaagttagcta---------------atttaatc |
44265761 |
T |
|
| Q |
116 |
accacatatgctaattacaagcattgtaatgcttaattagtattgtttatagtataagctgatcctaactaattaagctaaatatacattaaatgtattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265762 |
accacatatgctaattacaagcattgtaatgcttaattagtattgtttatagtataagctgatcctaactaattaagctaaatatacattaaatgtattt |
44265861 |
T |
|
| Q |
216 |
acctggacaaagcaggcatggaagtgaaggcgacaaaagccagcagcttgaccaacatcatcattgaagatcttttctgatgatagattcaagcttagga |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265862 |
acctggacaaagcaggcatggaagtgaaggcgacgaaagccagcagcttgaccaacatcatcattgaagatcttttctgatgatagattcaagcttagga |
44265961 |
T |
|
| Q |
316 |
cattttgaatcgtagaaggtcc |
337 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44265962 |
cattttgaatcgtagaaggtcc |
44265983 |
T |
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