View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_18 (Length: 350)
Name: NF0440_2D_low_18
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 36797990 - 36797659
Alignment:
| Q |
1 |
tagtaaccaatggttcatttcattcatgccatgacttaaccttatttaacaactacgtacatgacaaacnnnnnnnnngcaatattttaaagttgaactt |
100 |
Q |
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| T |
36797990 |
tagtaaccaatggttcatttcattcatgccatgacttaaccttatttaacaactacgtacatgacaaactttttttttgcaatattttaaagttgaactt |
36797891 |
T |
|
| Q |
101 |
tggtgaattttatgataatttttatgcggagaatagggagggaaatggtgtaacgttatagtcattcaaaaggagaagttgatgatgttataaagtcata |
200 |
Q |
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| T |
36797890 |
tggtgaattttatgataatttttatgcggagaatagggagggaaatggtgtaacgttatagtcattcaaaaggagaagttgatgatgttataaagtcata |
36797791 |
T |
|
| Q |
201 |
aactttgtattgtcggtgtggctatataccaaagaaataaaaaagaagagctcactatgaatttaatgtcatcaatgaaatgacgaaagaaaaactaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36797790 |
aactttgtattgtcggtgtggctatataccaaagaaataaaaaagaagagctcactatgaatttaatgtcatcaatgaaatgacgaaagaaaaactaaag |
36797691 |
T |
|
| Q |
301 |
tatgaagattttccatattgtatggtagagtt |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
36797690 |
tatgaagattttccatattgtatggtagagtt |
36797659 |
T |
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