View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_20 (Length: 338)
Name: NF0440_2D_low_20
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 34472095 - 34472411
Alignment:
| Q |
1 |
cttaaggttatcagcgatcatgtctacaatgatctttgagtcgccatgtccagaccaatgtatatgaataatgagatgagaaatattcttctgtcataac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34472095 |
cttaaggttatcagcgatcatgtctataatgatctttgagtcgccatgtccaaaccaatgtatatgaataatgagatgagaaatattcttctgttataac |
34472194 |
T |
|
| Q |
101 |
atgtcaaaacctatgtataaacctcacatttcagcatggaggtcatcataaggaccaatcttcctaatatagactttgatccatctttcgtatgaatcga |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34472195 |
atgtccaaacctatgtataaaccccacatttcagcatggaggtcatcataaggaccaatcttcctaatatagcatttgatccatctttcgtatgaatcat |
34472294 |
T |
|
| Q |
201 |
atagaagcccaccacaagtagcgattacacccatatatttgtatgcaccatcagcgttgaactttacccattcctcttgcgcccgtttccatccaatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
34472295 |
atagaagcccaccacaagtagcgattacacccttatatttgtatgcaccatcagcgttgaactttacccgttcctcttgcgcccatttccatccaatgta |
34472394 |
T |
|
| Q |
301 |
attaattagtatactttgaat |
321 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
34472395 |
at----tagtatactttgaat |
34472411 |
T |
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