View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_23 (Length: 314)
Name: NF0440_2D_low_23
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 43558658 - 43558952
Alignment:
| Q |
1 |
ccagggtccctttcagctcctcactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactgaaaaataaccgttggaaac |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43558658 |
ccagggtccctttcagctcctgactttcacagttacacttttatatatcactcttaatttatttctttaattccttaactgaaaaataaccgttggaaac |
43558757 |
T |
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| Q |
101 |
tctatagacgatagtcatacaaatcgggtatagtaaaagctttatagaacctaatggccaaacatatgctatataaattaccatcacccgttcctcattt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43558758 |
tctatagacgatagtcatacaaattgggtatagtaaaagctttatagaacctaatggccaaacatatgctatataaattatcatcacccgttcctcattt |
43558857 |
T |
|
| Q |
201 |
ttcatcacatcaaataatctctatccctcactcaaagtatcattcccattatcactaaataatctccagccatggctttctttttgaaactgttt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43558858 |
ttcatcacatcaaataatctctatccctcactcaaagtatcattcccattatcactaaataatctccagccatggctttctttttgaaactgttt |
43558952 |
T |
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