View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_low_27 (Length: 301)

Name: NF0440_2D_low_27
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_low_27
NF0440_2D_low_27
[»] chr7 (19 HSPs)
chr7 (1-266)||(24658319-24658584)
chr7 (102-259)||(38300325-38300487)
chr7 (86-260)||(1691624-1691803)
chr7 (112-266)||(30074572-30074729)
chr7 (108-258)||(2945347-2945500)
chr7 (144-253)||(33941593-33941703)
chr7 (108-244)||(25232949-25233087)
chr7 (126-259)||(43265892-43266026)
chr7 (108-260)||(39785500-39785654)
chr7 (107-246)||(27080420-27080557)
chr7 (107-246)||(27197744-27197881)
chr7 (108-260)||(46090140-46090298)
chr7 (126-246)||(39780969-39781090)
chr7 (108-184)||(32221862-32221940)
chr7 (148-244)||(10512018-10512115)
chr7 (108-182)||(34346836-34346910)
chr7 (126-183)||(26824465-26824522)
chr7 (126-216)||(36906279-36906370)
chr7 (126-244)||(40716879-40716998)
[»] chr3 (19 HSPs)
chr3 (109-258)||(7856503-7856653)
chr3 (108-260)||(26285771-26285924)
chr3 (116-259)||(38572987-38573131)
chr3 (109-260)||(24309880-24310032)
chr3 (117-265)||(23778272-23778421)
chr3 (108-266)||(36475470-36475629)
chr3 (106-205)||(52308856-52308956)
chr3 (126-259)||(25070669-25070803)
chr3 (126-259)||(36617735-36617869)
chr3 (149-266)||(36477986-36478106)
chr3 (126-259)||(26903171-26903305)
chr3 (108-183)||(395922-395998)
chr3 (109-181)||(36478213-36478285)
chr3 (132-179)||(23794964-23795011)
chr3 (108-165)||(30136586-30136644)
chr3 (108-165)||(30142715-30142773)
chr3 (108-165)||(30146137-30146195)
chr3 (196-225)||(25203050-25203079)
chr3 (196-225)||(25735263-25735292)
[»] chr5 (11 HSPs)
chr5 (102-235)||(7607236-7607370)
chr5 (109-260)||(36744941-36745095)
chr5 (108-260)||(34751027-34751180)
chr5 (108-266)||(43144564-43144725)
chr5 (108-240)||(26459695-26459826)
chr5 (127-266)||(5069867-5070007)
chr5 (108-260)||(25819080-25819235)
chr5 (126-189)||(33824755-33824818)
chr5 (126-259)||(17076570-17076706)
chr5 (127-235)||(29669996-29670105)
chr5 (126-189)||(5569034-5569097)
[»] chr4 (11 HSPs)
chr4 (108-266)||(2158633-2158792)
chr4 (109-266)||(2813993-2814151)
chr4 (147-258)||(36247913-36248026)
chr4 (126-260)||(1112020-1112155)
chr4 (109-182)||(36247832-36247905)
chr4 (146-260)||(25023182-25023296)
chr4 (158-266)||(4377331-4377443)
chr4 (109-182)||(4377240-4377313)
chr4 (146-266)||(33518114-33518237)
chr4 (109-182)||(33518033-33518107)
chr4 (109-160)||(52849787-52849838)
[»] chr1 (10 HSPs)
chr1 (108-266)||(8064983-8065142)
chr1 (112-266)||(9539557-9539712)
chr1 (110-258)||(27464210-27464359)
chr1 (147-266)||(10781112-10781234)
chr1 (126-259)||(1016963-1017097)
chr1 (109-182)||(10781246-10781319)
chr1 (152-266)||(34912362-34912472)
chr1 (211-266)||(25031052-25031107)
chr1 (151-219)||(23353434-23353503)
chr1 (108-183)||(44563567-44563643)
[»] chr2 (10 HSPs)
chr2 (102-235)||(34190023-34190157)
chr2 (108-266)||(32032977-32033136)
chr2 (108-260)||(7700342-7700494)
chr2 (139-260)||(3357042-3357161)
chr2 (126-246)||(18703622-18703743)
chr2 (110-235)||(34878614-34878740)
chr2 (126-259)||(4075463-4075597)
chr2 (126-188)||(38417811-38417873)
chr2 (126-235)||(27447679-27447788)
chr2 (151-251)||(41009696-41009797)
[»] chr8 (18 HSPs)
chr8 (108-260)||(7681313-7681466)
chr8 (109-266)||(29866166-29866327)
chr8 (109-266)||(44873289-44873447)
chr8 (108-260)||(10381424-10381577)
chr8 (108-260)||(24556854-24557007)
chr8 (102-179)||(34696984-34697061)
chr8 (106-189)||(11993693-11993776)
chr8 (126-259)||(45486153-45486287)
chr8 (135-258)||(6802712-6802836)
chr8 (108-260)||(32161343-32161494)
chr8 (108-258)||(29841119-29841271)
chr8 (129-260)||(43421633-43421764)
chr8 (149-235)||(31235824-31235911)
chr8 (127-244)||(33235575-33235693)
chr8 (126-181)||(11463188-11463243)
chr8 (109-158)||(35990865-35990914)
chr8 (126-237)||(7388101-7388213)
chr8 (108-183)||(43421514-43421590)
[»] scaffold0002 (1 HSPs)
scaffold0002 (108-266)||(461271-461430)
[»] chr6 (10 HSPs)
chr6 (102-259)||(21883254-21883412)
chr6 (112-260)||(6689212-6689363)
chr6 (108-189)||(16461651-16461732)
chr6 (108-266)||(14607707-14607865)
chr6 (126-259)||(18816933-18817067)
chr6 (132-259)||(24901708-24901836)
chr6 (102-189)||(33704111-33704199)
chr6 (128-260)||(30705311-30705444)
chr6 (108-172)||(8150815-8150880)
chr6 (102-158)||(35188047-35188102)
[»] scaffold0311 (1 HSPs)
scaffold0311 (126-253)||(800-928)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 24658319 - 24658584
Alignment:
Q  1 aacaacagacattaaacctgttagtgacaacagaaccaaaatacaaggaatacccaagcctcactatcacaaaactgccaacagctacaccaattcaccc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24658319 aacaacagacattaaacctgttagtgaaaacagaaccaaaatacaaggaatacccaagcctcactatcacaaaactgccaacagctacaccaattcgccc 24658418  T
Q  101 tttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaac 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  24658419 tttacctcattctttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattgctaatgttaatagaac 24658518  T
Q  201 atctctttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  24658519 atctctttctatataagttacaagacggtcatttagccaccgatcatccattttgttacataggtt 24658584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 38300487 - 38300325
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||| || |||    
T  38300487 ttacctcattgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaac 38300388  T
Q  201 atctctttctata----taagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    |||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38300387 atctatttctatataagtaagttacaagacggtcatttagccactgatcatccattttgttac 38300325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 1691624 - 1691803
Alignment:
Q  86 tacaccaattcaccctttacctcattgtttgatacaat----atattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||| ||||||||||| ||||||||||||||    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||| ||||    
T  1691624 tacaccaattcgccctttacctcgttgtttgatacaattaatatattacaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatca 1691723  T
Q  182 ttgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||| | | |||| |||||||||| | |||||||||||    
T  1691724 ttgttaattgttaatagaacatctctttatatataagttacaagacagccgtttatccactgatcaccaattttgttaca 1691803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 30074729 - 30074572
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctcttt 208  Q
    ||||||||||||| |||||||| ||||||  || ||||||||||||||||||||| || ||||||||||||||||||||| ||||  |||||||||||||    
T  30074729 gtttgatacaatacattacaatcaaaatctcgtctcctatccatttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctcttt 30074630  T
Q  209 ctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||||||||| ||||||||||||| ||||||  |||||||||||| |||||    
T  30074629 ctatataagttacaagatggtcatttagccattgatcactcattttgttacataggtt 30074572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 2945500 - 2945347
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatct 204  Q
    ||||||||||||||||| |||||||| ||||||  || ||||||| ||||||||||||||| ||||||||||||||||| |||| ||||  |||| |||     
T  2945500 cattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgctaattgttaaaagaaaatca 2945401  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  2945400 ctttctatataagctacaagacgatcatttaaccactgatcatccattttgtta 2945347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 33941703 - 33941593
Alignment:
Q  144 tcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatttagccactg 242  Q
    ||||||| |||||||||||||||| |||||| ||||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33941703 tcctatcaatttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccactg 33941604  T
Q  243 atcatccattt 253  Q
    || | ||||||    
T  33941603 attacccattt 33941593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 25232949 - 25233087
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctc 205  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||| ||| |  || ||| | |||  ||||||| ||    
T  25232949 cattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaataacagcgctgctaatttttaaaagaacatttc 25233048  T
Q  206 tttctatataagttacaagacggtcatttagccactgat 244  Q
    ||| ||||||| |||||||||| ||||||||||||||||    
T  25233049 tttttatataaattacaagacgatcatttagccactgat 25233087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 43266026 - 43265892
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||| | | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||||||| ||||||||||    
T  43266026 attacaatgaaaatcatctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctataaaagttacaag 43265927  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  43265926 ccgatcatttaaccattgatcacccattttgttac 43265892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 39785500 - 39785654
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctc 205  Q
    ||||||||||| ||||| | |||||||||||||||| | ||||||||||||| ||||||||||||||| ||| ||||| ||| |||||  |||||  | |    
T  39785500 cattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataattgttaaaagaacgcccc 39785599  T
Q  206 tttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||| ||| |||||||||||||||| |||| |||| | |||| |||| |||||||    
T  39785600 tttcgataaaagttacaagacggtcgtttaaccaccggtcattcattgtgttaca 39785654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 27080420 - 27080557
Alignment:
Q  107 tcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctct 206  Q
    |||||||||||||||||| |  ||||| | |||||| ||||||  |||||||||||||||||||||||||||||||  | | |||||  ||||||| |||    
T  27080420 tcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcatgctaattgttaaaagaacatatct 27080517  T
Q  207 ttctatataagttacaagacggtcatttagccactgatca 246  Q
    || |||||||||||||||| | | ||||| ||||| ||||    
T  27080518 ttttatataagttacaagaagtttatttaaccactaatca 27080557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 27197881 - 27197744
Alignment:
Q  107 tcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctct 206  Q
    |||||||||||||||||| |  ||||| | |||||| ||||||  |||||||||||||||||||||||||||||||  | | |||||  ||||||| |||    
T  27197881 tcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcatgctaattgttaaaagaacatatct 27197784  T
Q  207 ttctatataagttacaagacggtcatttagccactgatca 246  Q
    || |||||||||||||||| | | ||||| ||||| ||||    
T  27197783 ttttatataagttacaagaagtttatttaaccactaatca 27197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 46090298 - 46090140
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt-gttaatgttagtagaacatctct 206  Q
    ||||||||| ||| ||| ||||||||||||||||| || ||| ||||||||||||||||  |||||||||||| || || | |||||  ||||| |||||    
T  46090298 cattgtttggtacgatacattacaatgaaaatcgtctcatattcatttgttgaaaatgaattaaaatgacatccttagtaattgttaaaagaacttctct 46090199  T
Q  207 ttctata-----taagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||     ||| |||||||||  ||||||| ||||| |||||||| |||||||||    
T  46090198 ttctatatatagtaaattacaagacaatcatttatccactaatcatccactttgttaca 46090140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 39781090 - 39780969
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || ||| ||| |  |||||||||||||| ||| ||||||||||    
T  39781090 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 39780991  T
Q  225 acggtcatttagccactgatca 246  Q
     || ||||||| ||| ||||||    
T  39780990 ccgatcatttaaccattgatca 39780969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 32221940 - 32221862
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatc--gtttcctatccatttgttgaaaatgagctaaaatgacatcattg 184  Q
    ||||||||| ||||||| |||||| ||| ||||  || |||||||||||||||||||||||| ||||||||||||||||    
T  32221940 cattgtttggtacaataaattacattgagaatctcgtctcctatccatttgttgaaaatgagttaaaatgacatcattg 32221862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 10512115 - 10512018
Alignment:
Q  148 atccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagccactgat 244  Q
    ||||||||||||||||||||||||||| ||| ||||| ||| || |   |||||||||||||||||| ||||||||  |||||||||||  |||||||    
T  10512115 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctataaaagttacacaacggtcatttaatcactgat 10512018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 34346910 - 34346836
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||| |||||||| |||| | |||||||||| || ||||||||||| |||||||| | |||||||||||||    
T  34346910 cattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgtggaaaatgaacgaaaatgacatcat 34346836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 26824522 - 26824465
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||| | ||||||    
T  26824522 attacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataatatcatt 26824465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 36906279 - 36906370
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataa 216  Q
    |||| |||||||||||| | |||| |  ||||||||| |||| |||||| |||| |||||||| ||| |  |||||||||||||||||||||    
T  36906279 attagaatgaaaatcgtctactattcgattgttgaaagtgagttaaaataacattattgttaattgtcaaaagaacatctctttctatataa 36906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 40716998 - 40716879
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || || ||||||||||||||||||||| |||||| |||    |  ||| | |||  ||||||| ||||||| ||||| ||||||     
T  40716998 attacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataacagtggtactaacttttaaaagaacatttctttctgtataaattacaaa 40716899  T
Q  225 acggtcatttagccactgat 244  Q
    || |||||||||||||||||    
T  40716898 actgtcatttagccactgat 40716879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 7856503 - 7856653
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| |||| ||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  7856503 attgtttgatacaatacattataataaaaatcgtctcctatccatttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctt 7856602  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  7856603 tctatataagttacaagacagtcatttagccactgatcacccattttgtta 7856653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 26285924 - 26285771
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||  ||||||| |||    
T  26285924 cattgtttgatacaatacattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatct 26285825  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||| ||| |||||||||| |||||||||||||| |||| |||||||||||||    
T  26285824 ttctacatatgttacaagacagtcatttagccactaatcacccattttgttaca 26285771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 38572987 - 38573131
Alignment:
Q  116 gatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatat 214  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  215 aagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||    
T  38573087 aagttacacgacgatcatttagccattgatcatcaattttgttac 38573131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 24309880 - 24310032
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||  ||||| ||||||||||||| |||||  ||||||||||||    
T  24309880 attgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctt 24309979  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||| |||||||||||||  ||||||| |||| ||||||||||||| |||||    
T  24309980 tctatgtaagttacaagacattcatttaaccaccgatcatccattttattaca 24310032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 23778272 - 23778421
Alignment:
Q  117 atacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata 215  Q
    ||||| || |||||||| ||||| || || |||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||    
T  23778272 atacattacattacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 23778371  T
Q  216 agttacaagacggtcatttagccactgatcatccattttgttacacaggt 265  Q
    ||| |||| ||||| |||||| ||||||||| ||||||||||||| ||||    
T  23778372 agtaacaaaacggttatttagtcactgatcacccattttgttacataggt 23778421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 36475470 - 36475629
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| | ||||||||||||||| ||| || |||||||| ||||||||| ||||||||||||||| ||| |||||  |||||||||||    
T  36475470 cattgtttgatacaatacactacaatgaaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 36475569  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || ||||||||||||||||||||  |||| | ||||||||  |||||||||||| |||||    
T  36475570 ttttatataagttacaagacggttgtttatcaactgatcactcattttgttacataggtt 36475629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 52308956 - 52308856
Alignment:
Q  106 ctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatct 204  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  52308956 ctcattgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatct 52308857  T
Q  205 c 205  Q
    |    
T  52308856 c 52308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 25070803 - 25070669
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  25070803 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 25070704  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  25070703 ccgatcatttaaccattgatcacccattttgttac 25070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 36617869 - 36617735
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  36617869 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 36617770  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  36617769 ccgatcatttaaccattgatcacccattttgttac 36617735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 36478106 - 36477986
Alignment:
Q  149 tccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata--agttacaagacggtcatttagccactgatc 245  Q
    ||||||| |||||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||||||  |||||||| |||  ||||||| ||||||||    
T  36478106 tccatttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatatataagttacaaaacgaacatttagtcactgatc 36478007  T
Q  246 atccattttgttacacaggtt 266  Q
    ||||||||||||||| |||||    
T  36478006 atccattttgttacataggtt 36477986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 26903171 - 26903305
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| |   ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  26903171 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 26903270  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  26903271 ccgatcatttaaccattgatcacccattttgttac 26903305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 395998 - 395922
Alignment:
Q  108 cattgtttgatacaatatatt-acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||||||||| ||| || |||||||| || | | ||||||||||||||||||||||||||| ||||||||    
T  395998 cattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacatcatt 395922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 36478285 - 36478213
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||||||||  ||||||| ||||| || |   |||||||||||||||||||| |||||||||||||    
T  36478285 attgtttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaatgacatca 36478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 23794964 - 23795011
Alignment:
Q  132 atgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacat 179  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaaagacat 23795011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30136586 - 30136644
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30136586 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30142715 - 30142773
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30142715 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 30146137 - 30146195
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatg 165  Q
    ||||||||||||||||| | || |||||||||| || ||||||||||||||||||||||    
T  30146137 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatg 30146195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 25203079 - 25203050
Alignment:
Q  196 agaacatctctttctatataagttacaaga 225  Q
    ||||||||||||||||||||||||||||||    
T  25203079 agaacatctctttctatataagttacaaga 25203050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 25735263 - 25735292
Alignment:
Q  196 agaacatctctttctatataagttacaaga 225  Q
    ||||||||||||||||||||||||||||||    
T  25735263 agaacatctctttctatataagttacaaga 25735292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 7607370 - 7607236
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    ||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7607370 ttacctcattgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaac 7607271  T
Q  201 atctctttctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||||||||||  |||||||    
T  7607270 atctctttctatataagttacaagacactcattta 7607236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 36744941 - 36745095
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| |||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  36744941 attgtttgatacaataaattacaattaaaatcgtcttatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctt 36745040  T
Q  208 tc--tatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36745041 tctatatataagttacaagacggtcatttagccaccgatcacccattttgttaca 36745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 34751180 - 34751027
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||| |||||||||| | || | || ||||||||||||||||||||||||||||||||| ||| |||||  |  ||||||||    
T  34751180 cattgtttgatacaatacattaaaatgaaaatcatctcgtgtctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctct 34751081  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  34751080 ttatatataagttacaaaacggttatttagccaccgatcatccattttgttaca 34751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 43144564 - 43144725
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaat--cgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatct 204  Q
    ||||||||||||||||| ||||||||||||||  | | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||  |||||||||    
T  43144564 cattgtttgatacaatacattacaatgaaaatttcttctccaatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatct 43144663  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
     |||||||||| |||||||||| ||||||||| || || ||| ||||||||||||| |||||    
T  43144664 ttttctatatatgttacaagacagtcatttagtcattggtcacccattttgttacataggtt 43144725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 26459695 - 26459826
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctctt 207  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |  | | |||||   ||| |||||||    
T  26459695 cattgtttgatacaatacattacaatgaaaatcgtgtcctatccatttgttgaaaatgagctaaaatgagagc-tactaattgttaaaggaatatctctt 26459793  T
Q  208 tctatataagttacaagacggtcatttagccac 240  Q
    | ||||||||||||||||| |||||||||||||    
T  26459794 tatatataagttacaagacagtcatttagccac 26459826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 5069867 - 5070007
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| | || | || |||||||||||||||| |||||||| ||||||||||| |||||  | ||||||||||| |||||| ||||||| |    
T  5069867 ttacaatgaaaatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatataggttacaaaa 5069966  T
Q  226 cggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    | ||| |||||||||| |||| | ||||||||||| |||||    
T  5069967 cagtcgtttagccactaatcaccaattttgttacataggtt 5070007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 25819080 - 25819235
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac--atct 204  Q
    |||||||||| |||||| ||||| |||||||| || ||||||||||||||||||||| ||||||||| || | |||  |||  ||||  |||||  ||||    
T  25819080 cattgtttgaaacaatacattacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataactttattactaacagttaaaagaacatatct 25819179  T
Q  205 ctttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
     |||||| ||||||||||||||||||||||||||| |||||  |||||| ||||||    
T  25819180 atttctacataagttacaagacggtcatttagccattgatctcccatttggttaca 25819235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 33824818 - 33824755
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||| ||||    
T  33824818 attacaatgaaaatcgtctcctattcatttgttgaaaatgagttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 17076706 - 17076570
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt---agtagaacatctctttctatataagttaca 222  Q
    ||||||||||||||||| | | || |||||||||||||||||||| ||| |||||| || ||||  |   |  | |||||||||||| ||||||||||||    
T  17076706 attacaatgaaaatcgtctaccattcatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaaaaaaacatctctttcaatataagttaca 17076607  T
Q  223 agacggtcatttagccactgatcatccattttgttac 259  Q
    || || ||||||| ||| |||||  ||||||||||||    
T  17076606 agtcgatcatttaaccattgatcgcccattttgttac 17076570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 29669996 - 29670105
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    ||||||||||||| || | |||  |||||||||||||| ||||||||| |||| |||| ||| |||||  ||||||||| ||||||||||||||| ||||    
T  29669996 ttacaatgaaaattgtcttctaatcatttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatataagttagaaga 29670095  T
Q  226 cggtcattta 235  Q
     | |||||||    
T  29670096 tgatcattta 29670105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 5569034 - 5569097
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||| || || ||||||||||||||||||||| |||||| ||| ||||| ||||    
T  5569034 attacaatgaaaattgtctcgtatccatttgttgaaaatgagttaaaataacaacattgctaat 5569097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 2158633 - 2158792
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||| |||||  |||| ||||||    
T  2158633 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaataatatcattgctaattgttaaaagaagatctct 2158732  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||| |||||||||||||||||||||||   |||| ||||||||||||| |||||    
T  2158733 ttctatataggttacaagacggtcatttagccatcaatcacccattttgttacataggtt 2158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 2813993 - 2814151
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctt 207  Q
    |||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||| ||| |||||  | | ||| | ||    
T  2813993 attgtttgatacaatacattacaatgaaagtcgtctcatatccatttgttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatt 2814092  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||| ||||||||| ||||||||||||  |||||||||||| ||| ||||| |||||    
T  2814093 tctatacaagttacaatacggtcatttagttactgatcatccagtttattacataggtt 2814151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 36247913 - 36248026
Alignment:
Q  147 tatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatat--aagttacaagacggtcatttagccactga 243  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||| |||||||||||  ||||||||| |||||||||||||||||||    
T  36247913 tatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatatgtaagttacaaaacggtcatttagccactga 36248011  T
Q  244 tcatccattttgtta 258  Q
    |||||||||||||||    
T  36248012 tcatccattttgtta 36248026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 1112020 - 1112155
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || || |||||||||||||||||||| ||||||| || || |||||||| ||||  ||||||| | |||||||||||||||||||    
T  1112020 attacaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataacctcgttgttaattgttaaaagaacatgtatttctatataagttacaag 1112119  T
Q  225 acggtcatttagccactgatcatccattttgttaca 260  Q
    ||  ||||||| ||| ||||||||||||||||||||    
T  1112120 acaatcatttaaccattgatcatccattttgttaca 1112155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 36247832 - 36247905
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  36247832 attgtttgatacaatacattacaatgaaaatcgtctcatatccatttgttgaaaatgagctaaaatgacatcat 36247905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 25023296 - 25023182
Alignment:
Q  146 ctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatttagccactgat 244  Q
    ||||| ||||||| |||||| |||||||| | ||||||| |||| ||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  25023296 ctatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatataagttacaagacggttatttagccactgat 25023198  T
Q  245 catccattttgttaca 260  Q
    ||| ||||||||||||    
T  25023197 cattcattttgttaca 25023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 4377331 - 4377443
Alignment:
Q  158 tgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt---tctatataagttacaagacggtcatttagccactgatcatccattt 253  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||||| ||   | |||||||||||||||||| |||||||||||||||||| ||||||    
T  4377331 tgaaaatgagctaaaatgacatcattgctaattgtttaaagaacatcttttttctatatataagttacaagacgatcatttagccactgatcacccattt 4377430  T
Q  254 tgttacacaggtt 266  Q
    ||||||| |||||    
T  4377431 tgttacataggtt 4377443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 4377240 - 4377313
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||||    
T  4377240 attgtttgatacaatacattacaatgaaaatcgtcttatatccatttgttgaaaatgagttaaaatgacatcat 4377313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 33518114 - 33518237
Alignment:
Q  146 ctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttc--tatataagttacaagacggtcatttagccactg 242  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||  ||||||||| ||||  |||||||||||||||||| ||| |||||||||     
T  33518114 ctatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatatataagttacaagacgatcacttagccactt 33518213  T
Q  243 atcatccattttgttacacaggtt 266  Q
    ||    |||||||||||| |||||    
T  33518214 attgctcattttgttacataggtt 33518237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 33518033 - 33518107
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttg-aaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  33518033 attgtttgatacaatacattacaatgaaaatcgtcttatatccatttgtcgaaaaatgagctaaaatgacatcat 33518107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 52849838 - 52849787
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttga 160  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  52849838 attgtttaatacaatatattacaatgaaaatggtttcctatcaatttgttga 52849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 8064983 - 8065142
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||  |||||||||||    
T  8064983 cattgtttgatacaatacattacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 8065082  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || ||||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||||    
T  8065083 ttttatataagttataagacggtcatttaaccaatgatcatccattttattacataggtt 8065142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 9539712 - 9539557
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttct 210  Q
    ||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||| | ||||||| ||| |||||  ||| ||| ||||| |    
T  9539712 gtttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaataatatcattgcttattgttaaaagatcatatcttttt 9539613  T
Q  211 atataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||| | |||||||||||| || |||||||||||||||||||| |||||    
T  9539612 atataagttacgatacggtcatttagtcattgatcatccattttgttacataggtt 9539557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 27464359 - 27464210
Alignment:
Q  110 ttgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctcttt 208  Q
    ||||||||||||||| || ||||| |||| ||| |  |||| ||||||||||||||| |||||||||| ||||||||||| ||||  |||| |||| |||    
T  27464359 ttgtttgatacaatacatcacaattaaaaccgtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatcttttt 27464260  T
Q  209 ctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  27464259 ctatataagttacaagacggttatttagccactgatcacccattttgtta 27464210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 10781234 - 10781112
Alignment:
Q  147 tatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatata--agttacaagacggtcatttagccactga 243  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||| ||||  ||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  10781234 tatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatatataagttacaagacggtcatttagccactga 10781135  T
Q  244 tcatccattttgttacacaggtt 266  Q
    ||| | ||||||||||| |||||    
T  10781134 tcacctattttgttacataggtt 10781112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 1017097 - 1016963
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||| |||||||| | | ||||||||||||| ||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  1017097 attacaataaaaatcgtctgccatccatttgttgagaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 1016998  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  1016997 ccgatcatttaaccattgatcacccattttgttac 1016963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 10781319 - 10781246
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcat 182  Q
    |||||||||||||||| ||||||||||||||||| |  |||| |||||||||||||| ||||||||||||||||    
T  10781319 attgtttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgctaaaatgacatcat 10781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 34912362 - 34912472
Alignment:
Q  152 atttgttgaaaatgagctaaaatgacatcattgttaatg-ttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatcca 250  Q
    ||||||| |||||| | ||||||||||||||| |||||| |||  ||||||||| |||||||||||||    |||| ||| |||||||| |||||| |||    
T  34912362 atttgttaaaaatggg-taaaatgacatcatttttaatggttaaaagaacatctatttctatataagt----agacagtcgtttagccattgatcaccca 34912456  T
Q  251 ttttgttacacaggtt 266  Q
    |||||||||| |||||    
T  34912457 ttttgttacataggtt 34912472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25031052 - 25031107
Alignment:
Q  211 atataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||||||||||||| ||||||||| |||| |||| ||||||||||||| |||||    
T  25031052 atataagttacaagaccgtcatttagtcacttatcacccattttgttacataggtt 25031107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 23353434 - 23353503
Alignment:
Q  151 catttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttctatataagtt 219  Q
    ||||||||||||||||| |||||| |||| |||| | ||| |||  ||||||| ||||||||||||||||    
T  23353434 catttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatataagtt 23353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 44563567 - 44563643
Alignment:
Q  108 cattgtttgatacaatatatt-acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||| |||| |||| ||||||||||| || |   ||||||||||||||||||| || |||| ||||||||    
T  44563567 cattgtttgatgcaatttatttacaatgaaaattgtatatcatccatttgttgaaaatgaactgaaataacatcatt 44563643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 34190023 - 34190157
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||    
T  34190023 ttacctcattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaac 34190122  T
Q  201 atctctttctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||||||||||  |||||||    
T  34190123 atctctttctatataagttacaagacattcattta 34190157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 32032977 - 32033136
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctct 206  Q
    ||||||||||||||||| |||| ||||||||||||  |||||||||||||| |||||||| ||||||||||||| |  |||| ||||  |||||||||||    
T  32032977 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 32033076  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||||||||||||||||||| ||||| |||| || |||||||||||||||||||| |||||    
T  32033077 ttctatataagttacaagatggtcaattagtcagtgatcatccattttgttacataggtt 32033136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 7700342 - 7700494
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| ||| ||||||||||| | || ||| ||| |||||||||||||||||||||||||||||| ||| |||||  ||||||| |||    
T  7700342 cattgtttgatacaatacattgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tct 7700440  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||||||||||    
T  7700441 ttctatataagttacaagacaatcatctagccacagatcacctattttgttaca 7700494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 3357161 - 3357042
Alignment:
Q  139 tcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcatttagc 237  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||  | |||||||||||||||||||||||||||||||| ||||||     
T  3357161 tcgtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgtta-aaaaacatctctttctatataagttacaagacggtgatttag- 3357064  T
Q  238 cactgatcatccattttgttaca 260  Q
    |||| ||||||||||||||||||    
T  3357063 cact-atcatccattttgttaca 3357042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 18703743 - 18703622
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    |||||||||||||| || ||||||||||||||| ||||||||| ||||| | | ||||| |||| ||||  |||||||||||||||| ||||||||||||    
T  18703743 attacaatgaaaattgtctcctatccatttgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttctaaataagttacaag 18703644  T
Q  225 acggtcatttagccactgatca 246  Q
    ||||||||||| ||||| ||||    
T  18703643 acggtcatttatccactaatca 18703622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 34878740 - 34878614
Alignment:
Q  110 ttgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctcttt 208  Q
    ||||||||||||||  ||||||||  ||||  |||| ||| ||||||||||||||||| ||||| ||| |||||||||| |||||  ||||||| | |||    
T  34878740 ttgtttgatacaatgaattacaatataaattctttcatattcatttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatattt 34878641  T
Q  209 ctatataagttacaagacggtcattta 235  Q
    ||||||||||||||||||| |||||||    
T  34878640 ctatataagttacaagacgatcattta 34878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 4075463 - 4075597
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||| ||||||||||||||||||| ||| |||||| |  ||| ||| |  |||||||||||||| ||| ||||||||||    
T  4075463 attacaatgaaaatcgtctgccatcaatttgttgaaaatgagctagaataacatcagtactaattgtgaaaagaacatctctttcaataaaagttacaag 4075562  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||| ||||    
T  4075563 ccgatcatttaaccattgatcacccattttattac 4075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 38417811 - 38417873
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa 188  Q
    |||||| ||||||| || |||||||||||||||||||||||  ||||||  || |||||||||    
T  38417811 attacagtgaaaattgtctcctatccatttgttgaaaatgatttaaaatagcaacattgttaa 38417873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 27447788 - 27447679
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| || || |||| |||| ||| ||| |||||||||| |||  || | |||| |||  ||||||| ||| |||||||||| |||||||    
T  27447788 attacaatgaaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaattttaaaagaacatttctctctatataagctacaaga 27447689  T
Q  226 cggtcattta 235  Q
    | || |||||    
T  27447688 cagtaattta 27447679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 41009797 - 41009696
Alignment:
Q  151 catttgttgaaaatgagctaaaatgacatcattg-ttaatgttagtagaacatctctttctatataagttacaagacggtcatttagccactgatcatcc 249  Q
    |||||||||||| ||||  ||||| ||||||||  ||| ||||   ||||||||||||||||||||  ||| |||||| ||||||| ||| |||||| ||    
T  41009797 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacgatcatttaaccattgatcaccc 41009698  T
Q  250 at 251  Q
    ||    
T  41009697 at 41009696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 7681466 - 7681313
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||  ||||||| |||    
T  7681466 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatct 7681367  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||||||||| ||||||   ||||||| ||| |||||| |||||||||||    
T  7681366 ttctatataagttataagacgaatatttagctactaatcatctattttgttaca 7681313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 29866166 - 29866327
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaat--cgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctc 205  Q
    |||||||||||||||| ||||||||||||||  | | ||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||||||     
T  29866166 attgtttgatacaatacattacaatgaaaatttcatctccgatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatctt 29866265  T
Q  206 ttt-ctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||| || |||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  29866266 ttttctgtatatgttacaagacggtcatttagccattgatcacccattttgttacataggtt 29866327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 44873289 - 44873447
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctt 207  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| |||| |||| ||| |||||  ||||||||| ||    
T  44873289 attgtttgatacaatacattacaatgaaaatcgtcttctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttt 44873388  T
Q  208 tctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    |||||  ||||||||||| ||| ||||| ||||| |||| ||||||||||||| |||||    
T  44873389 tctatgcaagttacaagatggttatttaaccactaatcacccattttgttacataggtt 44873447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 10381424 - 10381577
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    |||||||||||| |||| |||||||| ||||| || || |||| ||||||||||||||| ||||||||||||||||||||| |||||  | ||||||| |    
T  10381424 cattgtttgatataatacattacaatcaaaattgtctcttatctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgt 10381523  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||| || ||| ||||||||||||||| ||||||| |||||    
T  10381524 ttatatataagttacaaaacagtcgtttagccactgatcacccattttattaca 10381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 24557007 - 24556854
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||  |||| || ||| |||| ||| |||||  |||| |  | |    
T  24557007 cattgtttgatacaatacattacaatgaaaatcgatttctatccatttgttgaaaatgaagtaaattgtcattattgctaattgttaaaagaaaactttt 24556908  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  24556907 ttatatataagttacaagacggtcatttagccaccaatcatccattttgttaca 24556854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 34697061 - 34696984
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacat 179  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||    
T  34697061 ttacctcattgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacat 34696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 11993776 - 11993693
Alignment:
Q  106 ctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||||| || |||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||    
T  11993776 ctcattgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaat 11993693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 45486287 - 45486153
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  45486287 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 45486188  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  45486187 ccgatcatttaaccattgatcacccattttgttac 45486153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 6802836 - 6802712
Alignment:
Q  135 aaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtcatt 233  Q
    ||||| || |||||| |||||||| |||||||  ||||||||| |||||| |||| ||||  | ||||||||||| ||||||||||||||||||| ||||    
T  6802836 aaaattgtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatataagttacaagacggacatt 6802737  T
Q  234 tagccactgatcatccattttgtta 258  Q
    ||||||| ||||| |||||||||||    
T  6802736 tagccaccgatcacccattttgtta 6802712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 32161494 - 32161343
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||||||||||| |||| ||  |||||||| || ||||  ||||||||||||||| |||||| |||||| |  ||| |||||  |||||||||||    
T  32161494 cattgtttgatacaatacattataactaaaatcgtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctct 32161397  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
    || |||| |||||||||||| ||||||||| |||| || | |||||||||||||    
T  32161396 ttttatacaagttacaagacagtcatttagtcactaataacccattttgttaca 32161343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 29841271 - 29841119
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctc 205  Q
    |||||||||||| |||||| ||| ||||||||| || || |||| |||||||||||||| | |||||| ||| |  || |||| || |  ||||||| ||    
T  29841271 cattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaataacaacggtgctaatttttaaaagaacatatc 29841172  T
Q  206 tttctatataagttacaagacggtcatttagccactgatcatccattttgtta 258  Q
    |||||||||||||||||||||  ||||||| ||||| |||||  |||||||||    
T  29841171 tttctatataagttacaagacactcatttaaccactaatcatttattttgtta 29841119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 43421633 - 43421764
Alignment:
Q  129 acaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacg 227  Q
    ||||| |||||||| ||||||||||||||| ||||||| |||||||||||  |||  | || ||||  |||| ||  |||| ||||||||||||||||||    
T  43421633 acaattaaaatcgtctcctatccatttgtt-aaaatgaactaaaatgacaatattactgattgttaaaagaatattactttttatataagttacaagacg 43421731  T
Q  228 gtcatttagccactgatcatccattttgttaca 260  Q
    |||||| ||| ||||||||   |||||||||||    
T  43421732 gtcattcagcaactgatcacttattttgttaca 43421764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 31235911 - 31235824
Alignment:
Q  149 tccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaagacggtcattta 235  Q
    |||||||||||||||||||||||||| ||||||||  ||| ||||   ||||||||||| ||||| || ||||||||||| |||||||    
T  31235911 tccatttgttgaaaatgagctaaaattacatcattactaattgtttcaagaacatctctctctatgtacgttacaagacgatcattta 31235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 33235575 - 33235693
Alignment:
Q  127 ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttctatataagttacaaga 225  Q
    |||||||||||||| | |   ||||||||||||||||||||||||||| ||| ||||| ||| || |   | |||||||||||||||| |||||||| ||    
T  33235575 ttacaatgaaaatcatctatcatccatttgttgaaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctataaaagttacacga 33235674  T
Q  226 cggtcatttagccactgat 244  Q
    || |||||||  |||||||    
T  33235675 cgttcatttaatcactgat 33235693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 11463188 - 11463243
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca 181  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||| ||||||    
T  11463188 attacaatgaaaatcgtctaccatccatttgttgaaaatgagctagaataacatca 11463243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 35990914 - 35990865
Alignment:
Q  109 attgtttgatacaatatattacaatgaaaatcgtttcctatccatttgtt 158  Q
    |||||||||||||||| || |||||||||||||| ||||||| |||||||    
T  35990914 attgtttgatacaatacataacaatgaaaatcgtctcctatctatttgtt 35990865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 7388213 - 7388101
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaatgtt-agtagaacatctctttctatataagttacaag 224  Q
    |||||||| ||||| || | || |||| |||||||||| | |||||||| | | ||||| |||| || |  | ||||| | |||||||||||||||||||    
T  7388213 attacaataaaaattgtcttctttccaattgttgaaaacgtgctaaaataaaaacattgctaatttttaaaaaaacatttatttctatataagttacaag 7388114  T
Q  225 acggtcatttagc 237  Q
    |||||||||||||    
T  7388113 acggtcatttagc 7388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 43421514 - 43421590
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcatt 183  Q
    ||||||||||| ||||| | ||||||| |||||||| | ||||| ||||||||||||||| ||||||| ||| ||||    
T  43421514 cattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatgaactaaaattacaacatt 43421590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 108 - 266
Target Start/End: Complemental strand, 461430 - 461271
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctct 206  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||  | ||||| |||    
T  461430 cattgtttggtacaatacattacaatgaaaatcgtctcctatctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaataacatatct 461331  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    || |||||||||||||| |||||| |||| ||||| |||||||||||||| ||| |||||    
T  461330 ttatatataagttacaaaacggtcgtttaaccactaatcatccattttgtcacataggtt 461271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 21883254 - 21883412
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaac 200  Q
    |||||||||||||| |||||||  ||||||||||||||||| | ||||||||||||||||||||||  ||||||||| ||||| ||| ||||  |||||     
T  21883254 ttacctcattgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaat 21883353  T
Q  201 atctctttctatataagttacaagacggtcatttagccactgatcatccattttgttac 259  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||| ||||||||||    
T  21883354 atctctttctatataagttacaacagggtcaattagtcactgatcatctattttgttac 21883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 6689212 - 6689363
Alignment:
Q  112 gtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaa-tgttagtagaacatctctttc- 209  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||| |||||  ||| ||||||||||     
T  6689212 gtttgatacaatacattacaatgaaaatcgtctcctatccatttattgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttct 6689311  T
Q  210 -tatataagttacaagacggtcatttagccactgatcatccattttgttaca 260  Q
     ||||||||||| ||||| || ||| ||||| || ||||||| |||||||||    
T  6689312 atatataagttataagacagtaattcagccattgttcatccactttgttaca 6689363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 16461732 - 16461651
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat 189  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||    
T  16461732 cattgtttgatacaatatattacaatgaaaattgtctcctattcatttgttgaaaatgagcttaaatgacatcattgttaat 16461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 266
Target Start/End: Complemental strand, 14607865 - 14607707
Alignment:
Q  108 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatca-ttgttaatgttagtagaacatctct 206  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||| |||||| || ||| |||||  | | ||| |||    
T  14607865 cattgtttgatacaatacattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacatcatttcttattgtta-aaaatcatatct 14607767  T
Q  207 ttctatataagttacaagacggtcatttagccactgatcatccattttgttacacaggtt 266  Q
    ||| ||| ||||||||| ||  |||||||| |||| |||||| |||| |||||| |||||    
T  14607766 ttcaatacaagttacaatacattcatttagtcactaatcatctatttggttacataggtt 14607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 18816933 - 18817067
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| |   ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| ||||||||||    
T  18816933 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 18817032  T
Q  225 acggtcatttagccactgatcatccattttgttac 259  Q
     || ||||||| ||| |||||| ||||||||||||    
T  18817033 ccgatcatttaaccattgatcacccattttgttac 18817067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 24901708 - 24901836
Alignment:
Q  132 atgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagacggtc 230  Q
    ||||||||||| | | ||||||||||||||||||||||| ||| |||||| || |||| || |  |||||||||||||| ||| |||||||||| || ||    
T  24901708 atgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccgatc 24901807  T
Q  231 atttagccactgatcatccattttgttac 259  Q
    ||||| ||| |||||| ||||||||||||    
T  24901808 atttaaccattgatcacccattttgttac 24901836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 33704111 - 33704199
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagct-aaaatgacatcattgttaat 189  Q
    ||||||||||||||||||||||| |||||||| ||||| || | ||||| ||||||| |||||||||| ||||||||||||||||||||    
T  33704111 ttacctcattgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaat 33704199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 30705311 - 30705444
Alignment:
Q  128 tacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaagac 226  Q
    |||||| |||||||| |  ||||||||||||||| ||||  |||||| || ||| ||||||| || |  |||| || ||||||| | || |||||||||     
T  30705311 tacaataaaaatcgtctattatccatttgttgaacatgatttaaaataacttcaatgttaattgtgaaaagaaaatatctttctgtgtatgttacaagat 30705410  T
Q  227 ggtcatttagccactgatcatccattttgttaca 260  Q
    |||||||||||||||||||| | |||||||||||    
T  30705411 ggtcatttagccactgatcaccgattttgttaca 30705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 8150880 - 8150815
Alignment:
Q  108 cattgtttgatacaatata-ttacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaa 172  Q
    ||||||||||| ||||| | ||||||| |||||||| | |||||||||||||||||||||||||||    
T  8150880 cattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagctaaa 8150815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 35188047 - 35188102
Alignment:
Q  102 ttacctcattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgtt 158  Q
    ||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||    
T  35188047 ttacctcattgtt-gatacaatacattacaatgaaaatcgtctcttatccatttgtt 35188102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 928 - 800
Alignment:
Q  126 attacaatgaaaatcgtttcctatccatttgttgaaaatgagctaaaatgacatcattgttaat-gttagtagaacatctctttctatataagttacaag 224  Q
    ||||||||||||||||| | |||| |  ||||||||||||||||||| | ||||||||| |||| || |  ||||||| |||||||||||||||||||||    
T  928 attacaatgaaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgctaattgtcaaaagaacatatctttctatataagttacaag 829  T
Q  225 acggtcatttagccactgatcatccattt 253  Q
    | ||||||||||||| |||||||| ||||    
T  828 atggtcatttagccattgatcatcgattt 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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