View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_low_32 (Length: 269)

Name: NF0440_2D_low_32
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_low_32
NF0440_2D_low_32
[»] chr1 (8 HSPs)
chr1 (1-269)||(45543494-45543762)
chr1 (21-177)||(45543922-45544078)
chr1 (16-174)||(45543380-45543538)
chr1 (181-269)||(45543137-45543231)
chr1 (78-174)||(45543850-45543946)
chr1 (113-177)||(45543348-45543412)
chr1 (131-177)||(45544935-45544981)
chr1 (209-261)||(45548598-45548650)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 45543494 - 45543762
Alignment:
Q  1 cttttgacatctgacgatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45543494 cttttgacatctgacgatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatt 45543593  T
Q  101 tttcagtttctgagggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagttcccgttccctcattactaccagt 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45543594 tttcagtttctgagggaatttcatggtttatattgatatccgtggatgctgtttcccgaggatattcattctgagttccagttccctcattactaccagt 45543693  T
Q  201 gctagtaccatcattactgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45543694 gctagtaccatcattactgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgt 45543762  T

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Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 45543922 - 45544078
Alignment:
Q  21 tgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagggaatt 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  45543922 tgtttcttgaggatattcattctgaatttctgttgcatcagattgatttccaacagtatttgtgacggcgttgaaagatttttcagtttctgagggaatt 45544021  T
Q  121 tcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45544022 tcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt 45544078  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 45543380 - 45543538
Alignment:
Q  16 gatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagg 115  Q
    |||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||| ||||| ||  ||||||| || ||||||||||||||    
T  45543380 gatactgtttcttgaggatattcactctgagtttctgctgcatcagattgattttcaacattgtatgtgatggtgttgaaagtttcttcagtttctgagg 45543479  T
Q  116 gaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctga 174  Q
    |||||||||||||| | |||| |||||  ||| |||||||  |||||||||||||||||    
T  45543480 gaatttcatggtttcttttgacatctgacgatactgtttcttgaggatattcattctga 45543538  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 45543137 - 45543231
Alignment:
Q  181 gttccctcattactaccagtgctagtaccatcattactgagcttagaagtttcatc------attttcaaaagggagagttttatcaacttttgt 269  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||      |||||||| ||||||||||||||||||||||||    
T  45543137 gttccctcattactaccaatgctagttccatcattactgagcttagaagtttcatcatttttattttcaagagggagagttttatcaacttttgt 45543231  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 45543850 - 45543946
Alignment:
Q  78 gtttgtgacggcattgaaagatttttcagtttctgagggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctga 174  Q
    |||||||| ||  ||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  |||||||||||||||||    
T  45543850 gtttgtgaaggtgttgaaagtttcttcagtttctgagggaatttcatggtttctattgatatctgcggatgttgtttcttgaggatattcattctga 45543946  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 45543348 - 45543412
Alignment:
Q  113 agggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt 177  Q
    ||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||| ||||||||    
T  45543348 agggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtt 45543412  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 45544935 - 45544981
Alignment:
Q  131 tattgatatctgtggatgctgtttcccgaggatattcattctgagtt 177  Q
    ||||||||||||||||   ||||||| ||||||||||||||||||||    
T  45544935 tattgatatctgtggacaatgtttcctgaggatattcattctgagtt 45544981  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 45548598 - 45548650
Alignment:
Q  209 catcattactgagcttagaagtttcatcattttcaaaagggagagttttatca 261  Q
    ||||||| | ||||||||||| ||| |||||||||  ||||||||||||||||    
T  45548598 catcatttccgagcttagaagcttcgtcattttcaggagggagagttttatca 45548650  T

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