View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440_2D_low_35 (Length: 237)

Name: NF0440_2D_low_35
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440_2D_low_35
NF0440_2D_low_35
[»] chr3 (8 HSPs)
chr3 (17-235)||(47414940-47415158)
chr3 (17-223)||(47398296-47398502)
chr3 (84-222)||(46543041-46543179)
chr3 (35-118)||(5155299-5155382)
chr3 (17-122)||(4582480-4582585)
chr3 (30-78)||(46531348-46531396)
chr3 (33-103)||(46507118-46507188)
chr3 (17-106)||(46469733-46469822)
[»] chr8 (3 HSPs)
chr8 (17-121)||(9677618-9677722)
chr8 (71-222)||(21465975-21466126)
chr8 (17-121)||(9693359-9693463)
[»] chr4 (2 HSPs)
chr4 (32-121)||(15555098-15555187)
chr4 (31-124)||(35160544-35160637)
[»] chr7 (3 HSPs)
chr7 (138-222)||(16729332-16729416)
chr7 (138-222)||(17706404-17706488)
chr7 (138-222)||(17716392-17716476)
[»] chr2 (1 HSPs)
chr2 (62-106)||(20154467-20154511)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 47414940 - 47415158
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47414940 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatg 47415039  T
Q  117 ctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttga 216  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415040 atgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttga 47415139  T
Q  217 ttaggtcatggttcatatc 235  Q
    |||||||||||||||||||    
T  47415140 ttaggtcatggttcatatc 47415158  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 47398296 - 47398502
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatg 116  Q
    |||||||||||| |||||||||||||| ||| |||| || || || |||||||||||||||| ||| ||||||||||||||||||||||| ||  |||||    
T  47398296 gagatgagaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatg 47398395  T
Q  117 ctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttga 216  Q
    || ||||||| ||| |    ||| ||||||||||||||||||||||||||||  | ||||||||||| ||||||| |||||||||||||||||||||||     
T  47398396 cttagcacggtgtgtagcgtcaaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttgg 47398495  T
Q  217 ttaggtc 223  Q
    |||||||    
T  47398496 ttaggtc 47398502  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 46543179 - 46543041
Alignment:
Q  84 tgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggaga 183  Q
    |||||||||||||||| ||| |||||||| |||||||||||   ||||| | |||| || ||||||||||| ||||||||||||| ||||| ||||||||    
T  46543179 tgtgtgggaccctcagcgccggccgcaattatgctgagcacaacgtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggaga 46543080  T
Q  184 gcaaatggttggccatggtcatggaaaccttgattaggt 222  Q
     |||||| ||||| |||||||  |||| |||| ||||||    
T  46543079 acaaatgtttggcgatggtcacagaaaacttgtttaggt 46543041  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 5155382 - 5155299
Alignment:
Q  35 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgct 118  Q
    ||||||||| ||| ||||||| ||   ||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgct 5155299  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 4582480 - 4582585
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatg 116  Q
    ||||||||| ||||||||||||||||||||| | ||||| |||   |||||||||||||||| ||    |||||| || ||||||||||| || || |||    
T  4582480 gagatgagaagcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatg 4582579  T
Q  117 ctgagc 122  Q
    ||||||    
T  4582580 ctgagc 4582585  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 46531396 - 46531348
Alignment:
Q  30 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 78  Q
    ||||||||||||||||||||||||||||| || ||||||  ||||||||    
T  46531396 aaggagttgagatgatcaatggattttgaaccaaggaaggagagaagct 46531348  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 46507118 - 46507188
Alignment:
Q  33 gagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagcc 103  Q
    |||||||||||||  || ||||| |||| ||||||||| |||| || ||| || |||||||||||||||||    
T  46507118 gagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagcc 46507188  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 46469822 - 46469733
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc 106  Q
    ||||||||| |  |||||||||||||| || |||||||| || | |||||| |||||||| | ||| |||||  ||||||||||| ||||    
T  46469822 gagatgagaagtgaaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagc 46469733  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 9677618 - 9677722
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatg 116  Q
    |||||||||| | ||||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || ||||||||||||||||| || |||||     
T  9677618 gagatgagagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgata 9677717  T
Q  117 ctgag 121  Q
    |||||    
T  9677718 ctgag 9677722  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 21465975 - 21466126
Alignment:
Q  71 gagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagt 170  Q
    |||||| | ||| ||||| ||||| ||||||||||| || |||||||| | |||   ||||| | | ||||||||||||||||||||  |||||||   |    
T  21465975 gagaagttgttgttgtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacacaacattggtttctttgtat 21466074  T
Q  171 tcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 222  Q
    ||||||||||||| |||||| ||||| |||||||  ||||||||| ||||||    
T  21466075 tcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt 21466126  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 9693359 - 9693463
Alignment:
Q  17 gagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatg 116  Q
    |||||||||| ||||| ||||||||||||| ||||||||  | | ||||||||| ||||||| ||| || || ||||| ||||||||| | || ||||||    
T  9693359 gagatgagagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatg 9693458  T
Q  117 ctgag 121  Q
    |||||    
T  9693459 ctgag 9693463  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 15555187 - 15555098
Alignment:
Q  32 ggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 121  Q
    ||||||||| ||||  ||||||||  ||| ||||||||||||||| | ||| ||||||| ||||||||||||||| || |||||||||||    
T  15555187 ggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 35160637 - 35160544
Alignment:
Q  31 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcac 124  Q
    ||||||||||||||||| |||||||  | | ||||||||| ||||||| ||| ||||| | ||||||||||||||| |  || |||||||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcac 35160544  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 16729416 - 16729332
Alignment:
Q  138 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 222  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  16729416 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 16729332  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 17706488 - 17706404
Alignment:
Q  138 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 222  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17706488 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17706404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 17716476 - 17716392
Alignment:
Q  138 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 222  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17716476 aatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17716392  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 20154511 - 20154467
Alignment:
Q  62 gaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc 106  Q
    ||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagc 20154467  T

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