View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_2D_low_39 (Length: 231)
Name: NF0440_2D_low_39
Description: NF0440_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_2D_low_39 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6968714 - 6968484
Alignment:
| Q |
1 |
agaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgttcttttctttatctgctgcttgtaatccctgcagagaagca |
100 |
Q |
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| T |
6968714 |
agaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgttcttttctttatctgctgcttgtaatccctgcagagaagca |
6968615 |
T |
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| Q |
101 |
gcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatat |
200 |
Q |
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| T |
6968614 |
gcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctccgaatctgtcttcctctgaccggtaagatcaagcgaacaatcaatat |
6968515 |
T |
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| Q |
201 |
cttctataacaacaactgacttactcgtgat |
231 |
Q |
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| T |
6968514 |
cttctataacaacaactgacttactcgtgat |
6968484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 2178004 - 2177955
Alignment:
| Q |
2 |
gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgact |
51 |
Q |
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| T |
2178004 |
gaccaaatcccatcaatgaaattcaacaatcctggaagtgttatctgact |
2177955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 2177906 - 2177837
Alignment:
| Q |
147 |
cattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaac |
216 |
Q |
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| T |
2177906 |
cattctcagaacctgtcttcctttaacctgtaagatcaagcaaagaatcaatagcttcaataacaacaac |
2177837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 44396278 - 44396215
Alignment:
| Q |
162 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttact |
225 |
Q |
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| T |
44396278 |
tcttcctttgacctgtaagatcaagtgaacaatcaatgtcttcaataacaataattgacttact |
44396215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 2833023 - 2833073
Alignment:
| Q |
2 |
gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgactt |
52 |
Q |
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| T |
2833023 |
gaccaaattccatcaatgaaattcaacaaaccagaaagagttaccttactt |
2833073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2829192 - 2829147
Alignment:
| Q |
1 |
agaccaaatcccatcaatgaaattcaacaatccagaaagtgttacc |
46 |
Q |
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| T |
2829192 |
agaccaaatcccatcaataaaattcaacaaaccagaaagagttacc |
2829147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 2860462 - 2860519
Alignment:
| Q |
162 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga |
219 |
Q |
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| T |
2860462 |
tcttcctctgaccggtaagctcgagagaacaatcaatatcttcaataacgataactga |
2860519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 2865841 - 2865898
Alignment:
| Q |
162 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga |
219 |
Q |
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| T |
2865841 |
tcttcctttgaccggtaagctcaagagaacaatcaatatcttcaataacgataactga |
2865898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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