View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_high_1 (Length: 451)
Name: NF0440_high_1
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_high_1 |
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| [»] scaffold0591 (2 HSPs) |
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Alignment Details
Target: scaffold0591 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 157 - 442
Target Start/End: Original strand, 4995 - 5280
Alignment:
| Q |
157 |
tacctaaaatcagtggtggtaaggacctatagctatatacattagtttgtgggtgttaggattttcaagtacacatggcaaaccattctaatgtgaaaga |
256 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4995 |
tacctaaaatcagtggtggtaaggacctatagctatatacattagtttgcgggtgttaggattttcaagtacacatggcaaaccattctaatgtgaaaga |
5094 |
T |
|
| Q |
257 |
cttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5095 |
cttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatg |
5194 |
T |
|
| Q |
357 |
gtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5195 |
gtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
5280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 4867 - 4928
Alignment:
| Q |
30 |
atagttattacatatattatgagtgatacaatacaagaaatagtgggggattgacaacaatc |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4867 |
atagttattacatatattatgagtgatacaatacaaaaaatagtgggggattgacaacaatc |
4928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 206 - 442
Target Start/End: Complemental strand, 28626240 - 28626004
Alignment:
| Q |
206 |
tgggtgttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaa |
305 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
28626240 |
tgggtgtttggattttcaagttcacatggcaaaccattctaatgtgttagacttaggtcatgtgaatggaaatggagagaggagatcagaaaaacaagaa |
28626141 |
T |
|
| Q |
306 |
ttagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatg |
405 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28626140 |
ttagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatg |
28626041 |
T |
|
| Q |
406 |
tgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
28626040 |
tgttgcaaaaagctggtaaaggtgctcaactctctgc |
28626004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 184 - 442
Target Start/End: Complemental strand, 28701273 - 28701018
Alignment:
| Q |
184 |
tatagctatatacattagtttgtgggtgttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggaga |
283 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
28701273 |
tatagctacatacattagtttgcaggtgttaggattttcaagttcatatggcaaaccattctaatgtgatagacttaggt---gtgaatggaaatggaga |
28701177 |
T |
|
| Q |
284 |
gaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgca |
383 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||| || |||||||||| | | ||||||||||||||| |||||||||||||||||| |
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| T |
28701176 |
gaggaggtcagaaaaaaaagaattagaagatgaagaaagtttctcatttggtatacagctttgcaactctatggtgctaccaatggtactccattctgca |
28701077 |
T |
|
| Q |
384 |
agtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28701076 |
agtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
28701018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 212 - 442
Target Start/End: Complemental strand, 28712150 - 28711920
Alignment:
| Q |
212 |
ttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaattagaa |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||| |
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| T |
28712150 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28712051 |
T |
|
| Q |
312 |
gatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatgtgttgc |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
28712050 |
gatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgc |
28711951 |
T |
|
| Q |
412 |
aaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
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|
| T |
28711950 |
aaaaagctggcaaaggtgctcaactctctgc |
28711920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 212 - 442
Target Start/End: Complemental strand, 28719497 - 28719267
Alignment:
| Q |
212 |
ttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaattagaa |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||| |
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|
| T |
28719497 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28719398 |
T |
|
| Q |
312 |
gatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatgtgttgc |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
28719397 |
gatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgc |
28719298 |
T |
|
| Q |
412 |
aaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
28719297 |
aaaaagctggcaaaggtgctcaactctctgc |
28719267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 212 - 442
Target Start/End: Complemental strand, 28727139 - 28726909
Alignment:
| Q |
212 |
ttaggattttcaagtacacatggcaaaccattctaatgtgaaagacttaggtcatgtgaatggaaatggagagaggaaatccgaaaaacaagaattagaa |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||| |
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|
| T |
28727139 |
ttaggattttcaagttcacatggcaaaccattctaatgtgttagacttcggtcatgtgaatggtaatggagagaggagatcagaaaaacaagaattagaa |
28727040 |
T |
|
| Q |
312 |
gatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgtatttgatgtgttgc |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
28727039 |
gatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgtatttgatgtgttgc |
28726940 |
T |
|
| Q |
412 |
aaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
28726939 |
aaaaagctggcaaaggtgctcaactctctgc |
28726909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 298 - 442
Target Start/End: Complemental strand, 28731753 - 28731609
Alignment:
| Q |
298 |
aacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgt |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28731753 |
aacatgaattagaagatgaagaaagtttcttatatgctatacagctttgcaactctatggtgctaccaatggtactccattctgcaagtcagcttggtgt |
28731654 |
T |
|
| Q |
398 |
atttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731653 |
ttttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
28731609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 28740624 - 28740548
Alignment:
| Q |
366 |
atggtactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28740624 |
atgggactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaagatgctcaactctctgc |
28740548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 28644561 - 28644498
Alignment:
| Q |
379 |
ctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28644561 |
ctgcaagtcagcttggtgtatttgatgtgttgcaaaaaactggtaaaggtgctcaactctctgc |
28644498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 28701441 - 28701392
Alignment:
| Q |
42 |
tatattatgagtgatacaatacaagaaatagtgggggattgacaacaatc |
91 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28701441 |
tatattatgagtgatacaatacaaaaaatagtggggaattgacaacaatc |
28701392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 28636828 - 28636764
Alignment:
| Q |
378 |
tctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
442 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
28636828 |
tctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgc |
28636764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 28626452 - 28626406
Alignment:
| Q |
46 |
ttatgagtgatacaatacaagaaata-gtgggggattgacaacaatc |
91 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
28626452 |
ttatgagtgatacaatacaaaaaaaaagtgggggattgacaacaatc |
28626406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 29645808 - 29645857
Alignment:
| Q |
390 |
cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctc |
439 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
29645808 |
cttggtgtttttgaagtgttgcaaaaagccggtaaaggtgctcaactctc |
29645857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 49110289 - 49110255
Alignment:
| Q |
297 |
aaacaagaattagaagatgaagaaagtttctcata |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
49110289 |
aaacaagaattagaagatgaagaaagcttctcata |
49110255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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