View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_high_4 (Length: 258)
Name: NF0440_high_4
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 40208180 - 40207957
Alignment:
| Q |
30 |
gttttgaccattattggttatagtagacaaagtgatacctctatcaaaggtaacacagaatgtgatggtgttggtgttttgggaattgcttgggcttttg |
129 |
Q |
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| T |
40208180 |
gttttgaccattattggttatagtagacaaagtgataccactatcaaaggtaacacagaatgtgatggtgttggtgttttgggaattgcttgggcttttg |
40208081 |
T |
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| Q |
130 |
gtggtatgatcttcatccttgtttactgcaccgccggtatctctggtaagctaccgttctcacttgatttcgttgaatgttgtttaaggtagttacaagt |
229 |
Q |
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| T |
40208080 |
gtggtatgatcttcatccttgtttactgcaccgccggtatctctggtaagctaccgttctcacttgatttcgttgaatgttgtttaaggtagttacaagt |
40207981 |
T |
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| Q |
230 |
tagttatttagtcggaaagtgtat |
253 |
Q |
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| T |
40207980 |
tagttatttagtcggaaagtgtat |
40207957 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 21793213 - 21793305
Alignment:
| Q |
90 |
tgtgatggtgttggtgttttgggaattgcttgggcttttggtggtatgatcttcatccttgtttactgcaccgccggtatctctggtaagcta |
182 |
Q |
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| T |
21793213 |
tgtgatggtgttggaattttgggtattgcttgggcttttggtggcatgattttcattcttgtttactgcaccgccggtatctctggtatgcta |
21793305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 4483527 - 4483487
Alignment:
| Q |
99 |
gttggtgttttgggaattgcttgggcttttggtggtatgat |
139 |
Q |
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| T |
4483527 |
gttggtgttcagggaattgcttgggcttttggtggaatgat |
4483487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 31460812 - 31460746
Alignment:
| Q |
111 |
ggaattgcttgggcttttggtggtatgatcttcatccttgtttactgcaccgccggtatctctggta |
177 |
Q |
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| T |
31460812 |
ggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggta |
31460746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 2650150 - 2650119
Alignment:
| Q |
111 |
ggaattgcttgggcttttggtggtatgatctt |
142 |
Q |
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| T |
2650150 |
ggaattgcttgggcttttggtggtatgatctt |
2650119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 2622039 - 2622075
Alignment:
| Q |
201 |
gttgaatgttgtttaaggtagttacaagttagttatt |
237 |
Q |
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| T |
2622039 |
gttgaatattgtttaaggtagttacgagttagttatt |
2622075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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