View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_high_5 (Length: 248)
Name: NF0440_high_5
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 17881196 - 17881435
Alignment:
| Q |
12 |
ataggcattacaaattgctacctttacatga---tgagaaagggaaagaatttggcaccaataaaacaatttaaatacaattaaagagaaactacaatta |
108 |
Q |
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| T |
17881196 |
ataggcattacaaattgctgcctttacatgatgatgagaaagggaaagaatttggcacgaataaaacaatttaaatacagttaaagagaaactacaatta |
17881295 |
T |
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| Q |
109 |
caatttagtcaagatcatggttgtcaaaatcgcaagtcgtaaaatagacatcaaaattgaaagattttactcgtgaaagatctcataaataggaaatgaa |
208 |
Q |
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| T |
17881296 |
caatttagtcaagaccatggttgtcaaaatcgcaagtcgtaaaatcgcaatcaaaattgaaagattttactcctataagatctcataaataggaaatgaa |
17881395 |
T |
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| Q |
209 |
agacagacaaagagaagaagaaacaagaggatataaaaac |
248 |
Q |
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| T |
17881396 |
agacaaataaggagaagaagaaacaagcggatataaaaac |
17881435 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 11032233 - 11032167
Alignment:
| Q |
181 |
gtgaaagatctcataaataggaaatgaaagacagacaaagagaagaagaaacaagaggatataaaaa |
247 |
Q |
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| T |
11032233 |
gtgaaagatctcataaatttgaaatgaaagacggacaaagagaagaagaaacaagaggatataaaaa |
11032167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 20756336 - 20756284
Alignment:
| Q |
128 |
gttgtcaaaatcgcaagtcgtaaaatagacatcaaaattgaaagattttactc |
180 |
Q |
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| T |
20756336 |
gttgtcaaaatcgggactcgtaaaatcgcaatcaaaattgaaagattttactc |
20756284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 28383746 - 28383708
Alignment:
| Q |
32 |
cctttacatgatgagaaa-gggaaagaatttggcaccaa |
69 |
Q |
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| T |
28383746 |
cctttacatgatgagaaaagggaaagaatttggcaccaa |
28383708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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