View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_low_2 (Length: 368)
Name: NF0440_low_2
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 29 - 309
Target Start/End: Complemental strand, 17881783 - 17881512
Alignment:
| Q |
29 |
aagcggttactaccagtccttatcatcaaaatgtctagatgaaaattaaagttgaagaagaaaatgaaaggtattcttggaaagtaaaaaaggctacacc |
128 |
Q |
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|||| |||| |||| |||| |||||||||| ||| || || ||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| | |
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| T |
17881783 |
aagctgttattaccggtccatatcatcaaattgtgtaaattaaaattaaaattgaagaataaaat-aaaggtattcttggaaagtaaaaaacgctacagc |
17881685 |
T |
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| Q |
129 |
aaaacaatgttttgtcttaattaatagttatagaaaatgaatgcactgtataaacaatttagagttgacaatggcatgatataaatccttcatatgtttg |
228 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881684 |
aaaacaatgtttttccttaattaatagttatagaagatgaatgcactgtataaacaacttagagttgacaatggcatgatataaatccttcatatgtttg |
17881585 |
T |
|
| Q |
229 |
cttcaagaaaatatatccttaatacgtaagataggaagggaaaatttaactccccaaaatcatgaagagaagagacaattt |
309 |
Q |
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|||||||||||||||||||| ||| || | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881584 |
cttcaagaaaatatatccttcatatgt----ttgga----aaaatttaactccccaaaatcatgaagagaagagacaattt |
17881512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 17881488 - 17881432
Alignment:
| Q |
310 |
gccaaagacacattttgtacgcgagataacctttgtgtgactttcttctctatccgttt |
368 |
Q |
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| T |
17881488 |
gccaaagacacatt--gtacacgagataacctttgtgtgactttcttctctatccgttt |
17881432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 22928167 - 22928110
Alignment:
| Q |
105 |
ttggaaagtaaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
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|||||| | |||||||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
22928167 |
ttggaatggaaaaaaggctacaccaaacacatgttttgtctttattaataggtataga |
22928110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 29642445 - 29642493
Alignment:
| Q |
114 |
aaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
| |
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||||||||||||||||||| |||| ||||||| |||||||| |||||| |
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| T |
29642445 |
aaaaaaggctacaccaaaaacatgtattgtctttattaataggtataga |
29642493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 19703253 - 19703202
Alignment:
| Q |
108 |
gaaagtaaaaaaggctacaccaaaacaatgttttgtcttaattaatagttat |
159 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
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| T |
19703253 |
gaaagtaaaaaaggccacaccaaaacaatgttttgtctttataaatagttat |
19703202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 14600326 - 14600278
Alignment:
| Q |
114 |
aaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
14600326 |
aaaaaaggctacaccaaaacaatgttttccctttattaatagttataga |
14600278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 2661738 - 2661681
Alignment:
| Q |
105 |
ttggaaagtaaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| ||||| ||| ||||||||||||||| |
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|
| T |
2661738 |
ttggaatgaaaaaaaggctacaccacaacaaagttttccctttattaatagttataga |
2661681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 31873036 - 31872984
Alignment:
| Q |
114 |
aaaaaaggctacaccaaaacaatgttttgtcttaattaatagttatagaaaat |
166 |
Q |
| |
|
|||| ||||||||||||| | ||||||| ||| ||||||||||||||||||| |
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| T |
31873036 |
aaaataggctacaccaaatccatgtttttcctttattaatagttatagaaaat |
31872984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 54079262 - 54079325
Alignment:
| Q |
106 |
tggaaagtaaaaaaggctacaccaaaacaatgttttgtcttaattaatagttatagaaaatgaa |
169 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||||| |||||||| |||||| |||||| |
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| T |
54079262 |
tggaaagtaaaataggctacaccaaataaatgtattgtctttattaatagatatagataatgaa |
54079325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 2704434 - 2704386
Alignment:
| Q |
114 |
aaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
2704434 |
aaaaaaggctacaccaaactaatgttttgcctttattaatagttataga |
2704386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 23463744 - 23463792
Alignment:
| Q |
114 |
aaaaaaggctacaccaaaacaatgttttgtcttaattaatagttataga |
162 |
Q |
| |
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|||||||||||||||||||||| || ||| ||| |||||||| |||||| |
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| T |
23463744 |
aaaaaaggctacaccaaaacaaagtattgcctttattaataggtataga |
23463792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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