View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_low_6 (Length: 205)
Name: NF0440_low_6
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 45459028 - 45458855
Alignment:
| Q |
1 |
acttgacgaaaaatcagaaggataaaatacatcagaatacttgaatcactgcctattactttcgctctaaaggtgaactcaaaggtggttgatcaacatt |
100 |
Q |
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| T |
45459028 |
acttgacaaaaaatcagaaggataaaatgcatcagaatacttgaatcactgcctattactttcgctctaaaggtgaactcaaaggtggttgatcaacacc |
45458929 |
T |
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| Q |
101 |
actgcctacaaatatcattgctattttatcattttatgagtgggtatagtagagcatgtttattaggaatgtcaac |
176 |
Q |
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| T |
45458928 |
acttcctacaaatatcattgctattttatcattttatgagtggg--tagtagagcatgtttattaggagtgtcaac |
45458855 |
T |
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