View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440_low_7 (Length: 205)
Name: NF0440_low_7
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 45459004 - 45459188
Alignment:
| Q |
1 |
ttatccttctgatttttcgtcaagtagggagtaaaaggagcctctaagttctcgttctcattaaccaaaaaatgtttaattaagtctagatccttctgta |
100 |
Q |
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| T |
45459004 |
ttatccttctgattttttgtcaagtagggagtaaaaggagcctctaagtcctcgttctcattaaccaaaaaatgtttaattaagtctagatccttctgta |
45459103 |
T |
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| Q |
101 |
gcacaaggcatatgtggggaggattagtcgtggttgtctcttggtttgtttgagtttctggaacaaattttatgtgtgatgatgt |
185 |
Q |
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| T |
45459104 |
gcacaaggcatatgtggggaggattagtcgtggttgtctcttggtttgtttgagtttcgggaacaaattttatgtgtgatgatgt |
45459188 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 23536499 - 23536569
Alignment:
| Q |
28 |
ggagtaaaaggagcctctaagttctcgttctcattaaccaaaaaatgtttaattaagtctagatccttctg |
98 |
Q |
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||||||||| |||||||||| | ||| |||||||||| ||| | ||||||||||||||| ||||||||||| |
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| T |
23536499 |
ggagtaaaaagagcctctaaatcctctttctcattaatcaatatatgtttaattaagtcaagatccttctg |
23536569 |
T |
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