View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0441_low_1 (Length: 485)
Name: NF0441_low_1
Description: NF0441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0441_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 87 - 475
Target Start/End: Original strand, 44613705 - 44614093
Alignment:
| Q |
87 |
ggtatgttccttctatgaatgttatgttatagtagattggttttagtagaatttgtttcatgtatttgttttttcatgtgtggtacacttatagctagca |
186 |
Q |
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| T |
44613705 |
ggtatgttccttctatgaatgttatgttatagtagattggttttagtagaatttgtttcatgtatttgttttttcatgtgtggtacacttatagctagca |
44613804 |
T |
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| Q |
187 |
tgcataaactttgtttgggttgacggtgagattgtcggaattatggtgagttattattattttggcaaaaacaaaactacacttttagaatattaccacc |
286 |
Q |
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| T |
44613805 |
tgcataaactttgtttgggttgatggtgagattgtcggaattatggtgagttattattattttggcaaaaacaaaactacacttttaaaatattaccacc |
44613904 |
T |
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| Q |
287 |
atgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttct |
386 |
Q |
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| T |
44613905 |
atgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttct |
44614004 |
T |
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| Q |
387 |
ataactcttagtggtctgatttgaggaccactgttttctttgttgttgaaaggaatgactgcaaaattacattaccattgttgtctgtg |
475 |
Q |
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| T |
44614005 |
ataactcttggtggtctgatttgaggaccactgttttctttattgttgaaaggaacgactgcaaaattacattaccattgttctctgtg |
44614093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 2227615 - 2227707
Alignment:
| Q |
249 |
tggcaaaaacaaaactacacttttagaatattaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtataca |
344 |
Q |
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| T |
2227615 |
tggcaaaaacaaaacaaaacttt-agagtattaccaccataattttatcaaactcatcgttcatccaaacatacactcaaata--aattgtataca |
2227707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 17058161 - 17058190
Alignment:
| Q |
418 |
tgttttctttgttgttgaaaggaatgactg |
447 |
Q |
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| T |
17058161 |
tgttttctttgttgttgaaaggaatgactg |
17058190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 24751456 - 24751420
Alignment:
| Q |
284 |
accatgattttatcaaattcatcgttcatccaaacat |
320 |
Q |
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| T |
24751456 |
accatgattttatcaaattcatcgtcaatccaaacat |
24751420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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