View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0441_low_11 (Length: 221)
Name: NF0441_low_11
Description: NF0441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0441_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7565250 - 7565384
Alignment:
| Q |
1 |
ggtacaaaggttccatgctaccatactacgatgttggtaatcgcattccactctgaaaaagatgatgccatcgcaagagtcaatcacctgagcatgaatc |
100 |
Q |
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| T |
7565250 |
ggtacaagggttccatgctaccatattacaatgtttgtaattgtattgcactctgaaaaagatgatgccatcgcaagagtcaatcacgtgagcatgaatg |
7565349 |
T |
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| Q |
101 |
tcacgagtctttaaagggaacttaatctttgtctc |
135 |
Q |
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| T |
7565350 |
tcacgagtgtttaaagggaacttaatctttgtctc |
7565384 |
T |
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 1442652 - 1442681
Alignment:
| Q |
55 |
gaaaaagatgatgccatcgcaagagtcaat |
84 |
Q |
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| T |
1442652 |
gaaaaagatgatgccatcgcaagagtcaat |
1442681 |
T |
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