View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0441_low_13 (Length: 209)
Name: NF0441_low_13
Description: NF0441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0441_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 19962396 - 19962499
Alignment:
| Q |
30 |
tcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccactgcaaccgt |
129 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19962396 |
tcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttgtctctactgcaaccgt |
19962494 |
T |
|
| Q |
130 |
ctctg |
134 |
Q |
| |
|
||||| |
|
|
| T |
19962495 |
ctctg |
19962499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
| Q |
62 |
accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccactgcaaccgtctctg |
134 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1971415 |
accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
1971487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 1971363 - 1971400
Alignment:
| Q |
30 |
tcttcatcttcctttcctcaacttcctcccctaccccc |
67 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1971363 |
tcttcatcttcctttcctcaccttcttcccctaccccc |
1971400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University