View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0441_low_2 (Length: 481)

Name: NF0441_low_2
Description: NF0441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0441_low_2
NF0441_low_2
[»] chr2 (20 HSPs)
chr2 (103-469)||(39416090-39416458)
chr2 (111-457)||(39474006-39474351)
chr2 (139-457)||(39151896-39152213)
chr2 (103-456)||(39136280-39136632)
chr2 (160-456)||(39458208-39458503)
chr2 (144-457)||(39487953-39488264)
chr2 (133-455)||(39422240-39422561)
chr2 (226-443)||(39495387-39495603)
chr2 (195-441)||(39123536-39123781)
chr2 (291-451)||(39129487-39129646)
chr2 (183-340)||(39215039-39215196)
chr2 (216-452)||(39601994-39602229)
chr2 (195-334)||(39382026-39382165)
chr2 (195-346)||(39427504-39427655)
chr2 (103-194)||(39458511-39458602)
chr2 (142-312)||(38792244-38792413)
chr2 (216-455)||(39450499-39450737)
chr2 (413-455)||(39399043-39399085)
chr2 (413-446)||(39479188-39479221)
chr2 (409-441)||(27155009-27155041)
[»] chr7 (1 HSPs)
chr7 (103-456)||(19806641-19806993)
[»] chr5 (1 HSPs)
chr5 (162-309)||(17058986-17059133)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 103 - 469
Target Start/End: Original strand, 39416090 - 39416458
Alignment:
Q  103 agctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416090 agctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttat 39416189  T
Q  203 cggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416190 cggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaa 39416289  T
Q  303 atccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttct 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416290 atccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttct 39416389  T
Q  403 ctgc--tcctcctcaatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctg 469  Q
    ||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416390 ctgcagcactcctcaatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctg 39416458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 111 - 457
Target Start/End: Original strand, 39474006 - 39474351
Alignment:
Q  111 catgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatt 210  Q
    |||||||||||   ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  39474006 catgcggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcacttggctttcaaattccttctgttttgaaatgttatccatgact 39474105  T
Q  211 tgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttga 310  Q
    |||| ||||||||  |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39474106 tgacaaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccaccaaatagagctgtccatcctttgctacaaaatccttga 39474205  T
Q  311 cacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttc-tctgctc- 408  Q
    ||||||||||| ||||| ||||||||||||||||||   ||||||| ||||||||||||| |||||||| ||||| |||||||||||| || || |  |     
T  39474206 cacattcttcaatttttccctgcattttcttgtgag---cttcgttcattcttccaacatgactaattttctttttcttattttcaagctcttcggagca 39474302  T
Q  409 ctcctcaatatctctctttatggaatgcaatctcttcttttctacttgc 457  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  39474303 ctcctcaatatctctctttatggaatgcaatctctccttttctatttgc 39474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 139 - 457
Target Start/End: Complemental strand, 39152213 - 39151896
Alignment:
Q  139 gataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttga 238  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||    
T  39152213 gataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttga 39152114  T
Q  239 gttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcatttt 338  Q
    |||||||||||||||| | |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  39152113 gttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcatttt 39152014  T
Q  339 cttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctgctcc--tcctcaatatctctctttatggaatgc 436  Q
    ||||  ||   |||||||||||||||||||| |  |||||||||||| |||||||||||| ||| ||   |  |||||||||| ||||||||| || |||    
T  39152013 cttgcaag---cttcgttaattcttccaacacaggtaatttcctttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgc 39151917  T
Q  437 aatctcttcttttctacttgc 457  Q
    | |||||||| ||||||||||    
T  39151916 agtctcttctcttctacttgc 39151896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 103 - 456
Target Start/End: Complemental strand, 39136632 - 39136280
Alignment:
Q  103 agctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttat 202  Q
    |||||||| ||  |||||| | ||||| | |||| |||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||    
T  39136632 agctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcaccagctccttcacttggctttccaattccttttgttttgaaatgttat 39136533  T
Q  203 cggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaa 302  Q
    |  ||| ||||||||||||||||||||||||||| ||||||| |||| |||| | |||||| ||||||| ||||  |||||| |||||||||||||||||    
T  39136532 ccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgcccttcctttgctacaaa 39136433  T
Q  303 atccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttct 402  Q
    ||||||||||||||| ||| ||||| |||||||||||||| |||   ||||| |||||||||||||||  ||||||||||||| |||||||||||| |||    
T  39136432 atccttgacacattcgtcaatttttccctgcattttcttgcgag---cttcgataattcttccaacatccctaatttcctttttcttattttcaagatct 39136336  T
Q  403 ctgc--tcctcctcaatatctctctttatggaatgcaatctcttcttttctacttg 456  Q
      ||    |||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  39136335 tcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 39136280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 160 - 456
Target Start/End: Complemental strand, 39458503 - 39458208
Alignment:
Q  160 tccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaa 259  Q
    ||||||||||| |||||||| | |||||||||||||||||||||  ||| |||| ||||||| | |||||||||||||||||||||||||||||| | ||    
T  39458503 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaa 39458404  T
Q  260 tcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaat 359  Q
    |||| || |||| ||||||||| ||| ||||||||||| ||||||||| |||||||| |||| ||||  |||  ||||||||| |||   |||||| |||    
T  39458403 tcaagtcttccatcaaatagagttgtgcttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgag---cttcgtcaat 39458307  T
Q  360 tcttccaacataactaatttccttttgcttattttcaagttctctgc--tcctcctcaatatctctctttatggaatgcaatctcttcttttctacttg 456  Q
    ||||||||||||| || ||||||||| ||| |||||||| ||| |||    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  39458306 tcttccaacataaatagtttcctttttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttg 39458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 144 - 457
Target Start/End: Original strand, 39487953 - 39488264
Alignment:
Q  144 caaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttct 243  Q
    |||||||||| | ||||||||||  ||||||||||||| |||||||||||||||||||||  ||| || ||||||||||  ||||||||| | |||||||    
T  39487953 caaatcattcaccagctccttcatctggctttcaaatttcttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttct 39488052  T
Q  244 tgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgt 343  Q
    |||||| ||  || |||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||    
T  39488053 tgcttgtgcctcc-aatcaagtcctccatcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagt 39488151  T
Q  344 gagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctct-gctc-ctcctcaatatctctctttatggaatgcaatct 441  Q
    ||    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| | |  | |||||||| |||||||||||| || |||| |||    
T  39488152 ga---acttcgttaattcttccaacacaactaatttcctttttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtct 39488248  T
Q  442 cttcttttctacttgc 457  Q
    |  || ||||||||||    
T  39488249 cccctcttctacttgc 39488264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 133 - 455
Target Start/End: Original strand, 39422240 - 39422561
Alignment:
Q  133 tgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttg 232  Q
    |||| |||||||||||||||| | |||||   || ||||| ||| |||||||||||||||||||||| |||  ||| || ||||||||||| || |||||    
T  39422240 tgttttgataccaaatcattctccagctcggccaattggccttccaattccttctgttttgaaatgtcatccatgactttacgaagttccagcttttttg 39422339  T
Q  233 tcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacattcttcagtttttacctg 332  Q
    | |||||||||||||||||||| | |||||| |  |||| |||| ||||||||  |||||||||||| || |||| ||||||||||||| ||||  ||||    
T  39422340 tgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgctacgaattcctcgacacattcttcaattttcccctg 39422439  T
Q  333 cattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctgc--tcctcctcaatatctctctttatg 430  Q
    |||||||||||    | |||| |||||||||||||||| |||||||||||||| ||||||||| || ||| |||    || |||||||||||||||||||    
T  39422440 cattttcttgt---atgcttccttaattcttccaacatcactaatttcctttttcttattttccagctctttgcagcacttctcaatatctctctttatg 39422536  T
Q  431 gaatgcaatctcttcttttctactt 455  Q
    || |||||| |||||| ||||||||    
T  39422537 gactgcaatatcttctcttctactt 39422561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 39495387 - 39495603
Alignment:
Q  226 tcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacattcttcagttt 325  Q
    ||||||||||||||||||||||||||||| | |||||| || |||| |||| |||||||| ||| ||||||| ||||||||||||| ||||||||| |||    
T  39495387 tcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgctgcaaaatccttgacgcattcttcaattt 39495486  T
Q  326 ttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctg--ctcctcctcaatatctct 423  Q
    || ||||||||||||| || |    ||||||| || || ||||| |||| ||||||||||   ||||| |||| ||| ||     |||||||||||||||    
T  39495487 tttcctgcattttcttatggg---attcgttagttatttcaacaaaactcatttccttttttatatttccaagctctttggagcgctcctcaatatctct 39495583  T
Q  424 ctttatggaatgcaatctct 443  Q
    ||||||||| ||||||||||    
T  39495584 ctttatggactgcaatctct 39495603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 195 - 441
Target Start/End: Complemental strand, 39123781 - 39123536
Alignment:
Q  195 aatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttccttt 294  Q
    |||||||||  ||||||||| ||||||    ||||||||||| ||||||| ||||||||| | |||||  || |||| |||| |||| ||| ||| ||||    
T  39123781 aatgttatccatgatttgacaaagttctgtttcttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgcttt 39123682  T
Q  295 gctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttatttt 394  Q
     | | ||||||||||||| |||||||||||||| ||||||||||||||||||    ||||| ||||||| |||||||||| |||||||||| | ||||||    
T  39123681 acaagaaaatccttgacaaattcttcagtttttccctgcattttcttgtgag---attcgtaaattctttcaacataactcatttcctttttcatatttt 39123585  T
Q  395 caagttctct---gctcctcctcaatatctctctttatggaatgcaatct 441  Q
    |||| ||| |   || || ||||||||||||||| |||||| ||||||||    
T  39123584 caagatctttggagcacc-cctcaatatctctctgtatggagtgcaatct 39123536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 291 - 451
Target Start/End: Complemental strand, 39129646 - 39129487
Alignment:
Q  291 ctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgctta 390  Q
    ||||||| ||||||||||||||||||||||| ||||  |||| |||||||||||||   |||| |||||||||||| ||| |||||||||||||| | ||    
T  39129646 ctttgctgcaaaatccttgacacattcttcaattttcccctggattttcttgtgag---cttccttaattcttccagcatcactaatttcctttttcata 39129550  T
Q  391 ttttcaagttctctg--ctcctcctcaatatctctctttatggaatgcaatctcttcttttct 451  Q
    |||||||| ||| ||     |||||||||||||||||||||||| ||||||||||||| ||||    
T  39129549 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 183 - 340
Target Start/End: Complemental strand, 39215196 - 39215039
Alignment:
Q  183 cttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagc 282  Q
    ||||| ||||||||||||| |  ||| ||||  |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||    
T  39215196 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 39215097  T
Q  283 tgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttct 340  Q
    |  ||||||||  ||||||||||||| | |||||||||| ||||| ||||||||||||    
T  39215096 ttcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttct 39215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 452
Target Start/End: Complemental strand, 39602229 - 39601994
Alignment:
Q  216 aagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacat 315  Q
    |||||||| ||| || || ||||| ||| |||||||||| | |||||| || ||||  |||||||| || ||||||||  ||||||||||||| | ||||    
T  39602229 aagttccatctccttcgttttgagctctagcttgcgctctccaatcaagtcatccatgaaatagagttgcccttccttcactacaaaatccttaatacat 39602130  T
Q  316 tcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctgc--tcctcct 413  Q
    |||||| ||||| ||||||||||||  ||||   |||||  ||||| || || | ||||||||||||||| |||||||||||| ||| |||    |||||    
T  39602129 tcttcaatttttccctgcattttctcatgag---cttcgaaaattcctctaaaacaactaatttcctttttcttattttcaagctctttgcggcactcct 39602033  T
Q  414 caatatctctctttatggaatgcaatctcttcttttcta 452  Q
     ||||||| |||||||||| |||||||| |||| |||||    
T  39602032 gaatatctatctttatggactgcaatctattctcttcta 39601994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 334
Target Start/End: Original strand, 39382026 - 39382165
Alignment:
Q  195 aatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttccttt 294  Q
    |||||||||  ||| ||||  |||||||| |||||||| |||||| ||| |||||||||| | |||||  |  |||| ||||||||||||  |||||||     
T  39382026 aatgttatcaatgacttgattaagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctgatcttccttc 39382125  T
Q  295 gctacaaaatccttgacacattcttcagtttttacctgca 334  Q
     ||||||| ||||||| |||||||||||||||| ||||||    
T  39382126 actacaaactccttgatacattcttcagttttttcctgca 39382165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 39427504 - 39427655
Alignment:
Q  195 aatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttccttt 294  Q
    |||||||||  ||| ||||||||||||    ||||||||  ||||||| ||||||||||| | |||||| || | || |||| |||||||| ||| ||||    
T  39427504 aatgttatccttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagctgtgctttcttt 39427603  T
Q  295 gctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgag 346  Q
    ||  ||||||||||||||||||| |||  || | |||||| |||||||||||    
T  39427604 gcatcaaaatccttgacacattcatcaaattctccctgcaatttcttgtgag 39427655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 39458602 - 39458511
Alignment:
Q  103 agctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttga 194  Q
    ||||||||||| ||||||| | ||||| | |||| ||||| |||||||||| ||||||||||| | ||| ||||||||||||||| ||||||    
T  39458602 agctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 39458511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 312
Target Start/End: Complemental strand, 38792413 - 38792244
Alignment:
Q  142 accaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagtt 241  Q
    |||||||||||| | |||||||||||||||||||| || | |||||| |||||||||| |||  ||| ||||  ||| |||  ||||||| |||  ||||    
T  38792413 accaaatcattcaccagctccttcacttggctttccaaatgcttctg-tttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagtt 38792315  T
Q  242 cttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgaca 312  Q
    ||||| | ||||| | |||||| ||||||| |||| | |||| | ||||||| || || ||||||| ||||    
T  38792314 cttgcctacgctctccaatcaagtcctccatcaaacatagctctacttccttcgcgactaaatcctcgaca 38792244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 455
Target Start/End: Complemental strand, 39450737 - 39450499
Alignment:
Q  216 aagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacat 315  Q
    |||||| | |||||| | |||||| ||| |||||||||| | |||||| |  |||| |||||||||||| ||||||||| | ||||| | ||||| |||     
T  39450737 aagttctatctctttcgccttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctgcccttcctttaccacaaactgcttgatacaa 39450638  T
Q  316 tcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctgctcc--tcct 413  Q
    || ||| ||| | |||||| ||| |   || |||| ||   |||||||| |||| |||||| || ||||| |||||||| ||| ||| |||  |  ||||    
T  39450637 tcgtcaatttcttcctgcactttgtcacgaacttcatc---aattcttctaacacaactaacttgctttttcttattttgaagctctttgcagcagtcct 39450541  T
Q  414 caatatctctctttatggaatgcaatctcttcttttctactt 455  Q
    |||||||| |||| ||||| ||||||||||| | ||||||||    
T  39450540 caatatctgtcttgatggactgcaatctcttttcttctactt 39450499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 39399043 - 39399085
Alignment:
Q  413 tcaatatctctctttatggaatgcaatctcttcttttctactt 455  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  39399043 tcaatatctctctttatggactgcaatctcttctcttctactt 39399085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 39479188 - 39479221
Alignment:
Q  413 tcaatatctctctttatggaatgcaatctcttct 446  Q
    |||||||||||||||||||| |||||||||||||    
T  39479188 tcaatatctctctttatggactgcaatctcttct 39479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 27155009 - 27155041
Alignment:
Q  409 ctcctcaatatctctctttatggaatgcaatct 441  Q
    |||||||||||||||||||||||| ||||||||    
T  27155009 ctcctcaatatctctctttatggactgcaatct 27155041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 103 - 456
Target Start/End: Complemental strand, 19806993 - 19806641
Alignment:
Q  103 agctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttat 202  Q
    |||||||| ||  |||||| | ||||| | |||| ||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  19806993 agctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattccttttgttttgaaatgttat 19806894  T
Q  203 cggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaa 302  Q
    |  ||| |||| |||||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||| ||||  |||||| |||||||||||||||||    
T  19806893 ccatgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgcccttcctttgctacaaa 19806794  T
Q  303 atccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttct 402  Q
    ||||||||||||||  | |||||   |||||||||||||| |||   ||| ||||||||| |||||||||||||||||||||| |||||||||||| |||    
T  19806793 atccttgacacatttgttagtttccccctgcattttcttgcgag---ctttgttaattctcccaacataactaatttcctttttcttattttcaagatct 19806697  T
Q  403 ctgctcc--tcctcaatatctctctttatggaatgcaatctcttcttttctacttg 456  Q
      ||  |  ||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  19806696 tcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 19806641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 309
Target Start/End: Complemental strand, 17059133 - 17058986
Alignment:
Q  162 cttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatc 261  Q
    ||||| || ||||||||| | |||||||||||||||||||||  ||| ||||||||||||   ||||||||||  |||||||||||||||||| | ||||    
T  17059133 cttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatc 17059034  T
Q  262 aattcctccaccaaatagagctgtccttcctttgctacaaaatccttg 309  Q
    || |||||||  | | |||| |  ||||||||||||| ||| ||||||    
T  17059033 aagtcctccatgagagagagtttcccttcctttgctaaaaattccttg 17058986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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