View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0441_low_4 (Length: 398)
Name: NF0441_low_4
Description: NF0441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0441_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 18669440 - 18669157
Alignment:
| Q |
11 |
cagagatttaaatgcacactcacaaatgccacatgacttattgacataaccagcatcctttgagttcttaatcaaagaaattacacttgatatacgatga |
110 |
Q |
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| T |
18669440 |
cagagattcaaatgcacactcacaaatgccacatgacttattgacataaccagtatccttggagtttttaatcaaagaaattacacttggtgtacgaaga |
18669341 |
T |
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| Q |
111 |
tgacgatgaaataaaacgcatcttcaacgtgagagacgtcaaggtgttattgagaatagttttcaagcctagtgcaaggaaggtggggtggttggagagg |
210 |
Q |
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| T |
18669340 |
tgaagatgaaataaaaagcatcttcaacgtgagagaggtcaaggtgttattgagaatagttttcaatcctagtgcaagaaaggtggggtggttggtgagg |
18669241 |
T |
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| Q |
211 |
ttgagggatgtgagacgggaaacagaagggggaaaacgagagagaagtgcattaaggtcaccacataagctagagagatcgacg |
294 |
Q |
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| T |
18669240 |
ttgagggatgtgagacgggaaacagaagggggaaaacgagagagaagtgcaataaggtcaccacagaagctagagagatcgacg |
18669157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 18662977 - 18662823
Alignment:
| Q |
11 |
cagagatttaaatgcacactcacaaatgccacatgacttattgacataaccagcatcctttgagttcttaatcaaagaaattacacttgatatacgatga |
110 |
Q |
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| T |
18662977 |
cagagattcaaatgcacactcacaaatgccacatgacttattgacataaccagtgtccattgagtttttaatcaaagaaattacacttggtatacgatga |
18662878 |
T |
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| Q |
111 |
tgacgatgaaataaaacgcatcttcaacgtgagagacgtcaaggtgttattgaga |
165 |
Q |
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| T |
18662877 |
tgacgataaaataaaaagcatcttcaacgtgagagaggtgaaggtgctattgaga |
18662823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 18662824 - 18662735
Alignment:
| Q |
205 |
gagaggttgagggatgtgagacgggaaacagaagggggaaaacgagagagaagtgcattaaggtcaccacataagctagagagatcgacg |
294 |
Q |
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| T |
18662824 |
gagatgttgagggatgtgagacgggaaacagaagggggaaaacgggagagaattgcattaaggtcaccacagaagctagagagatcgacg |
18662735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 33707957 - 33707874
Alignment:
| Q |
188 |
ggaaggtggggtggttggagaggttgagggatgtgagacgggaaacagaagggggaaaacgagagagaagtgcattaaggtcaccac |
274 |
Q |
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| T |
33707957 |
ggaaggtggggtggttggagaggttgagggaagtga---gggaaacagaatgagggattcgagagagaagtgtgtttaggtcaccac |
33707874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 27004707 - 27004670
Alignment:
| Q |
188 |
ggaaggtggggtggttggagaggttgagggatgtgaga |
225 |
Q |
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| T |
27004707 |
ggaaggtggtgtggttggagaggttgagggatgtgaga |
27004670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 33397617 - 33397693
Alignment:
| Q |
154 |
gtgttattgagaatagttttcaagcctagtgcaaggaaggtggggtggttggagaggttgagggatgtgagacggga |
230 |
Q |
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| T |
33397617 |
gtgtttttgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacggga |
33397693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 33713791 - 33713755
Alignment:
| Q |
188 |
ggaaggtggggtggttggagaggttgagggatgtgag |
224 |
Q |
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| T |
33713791 |
ggaaggtggggtggttggagaggttgagggaagtgag |
33713755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 37579804 - 37579742
Alignment:
| Q |
153 |
ggtgttattgagaatagttttcaagcctagtgcaaggaaggtggggtggttggagaggttgag |
215 |
Q |
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| T |
37579804 |
ggtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgag |
37579742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 51988948 - 51988911
Alignment:
| Q |
104 |
acgatgatgacgatgaaataaaacgcatcttcaacgtg |
141 |
Q |
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| T |
51988948 |
acgatgatgacgaagaaataaaaagcatcttcaacgtg |
51988911 |
T |
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