View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0442_high_2 (Length: 417)
Name: NF0442_high_2
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 127 - 346
Target Start/End: Original strand, 11224422 - 11224637
Alignment:
| Q |
127 |
agtggactgcttttgtgcatcactataaaggtgacaaaatgaaggtatataaatttattttacaagcattctcttagaatctataaagatactaaaatgt |
226 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224422 |
agtggactacttttgtgcatcactataaaggtgacaaaatgaaggtatagaaatttattttacaagcattctcttagaatctataaagatactaaaatgt |
11224521 |
T |
|
| Q |
227 |
ccttataatatgtctttgacaccgagaatatttatttacacaatctcatattctaaaaaactttgtcatacaagtattaactatcatagtttaaaattgt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
11224522 |
ccttataatatgtctttgacaccgagaatatttatttacacaatctcatattctaaaaaactatgtcatacaa----taactatcatagtttaaaattgt |
11224617 |
T |
|
| Q |
327 |
agaaacaaagtgagaagaat |
346 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11224618 |
tgaaacaaagtgagaagaat |
11224637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 11228449 - 11228568
Alignment:
| Q |
13 |
taggggatagatggagatcctataaatatagcttaaggaatgcatacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccagg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11228449 |
taggggatagatggagatcctataaatatagcttaaggaatacatacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccagg |
11228548 |
T |
|
| Q |
113 |
tgtgggtcctgttgagtgga |
132 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11228549 |
tgtgggtcctgttgagtgga |
11228568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 13551975 - 13552007
Alignment:
| Q |
17 |
ggatagatggagatcctataaatatagcttaag |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13551975 |
ggatagatggagatcctataaatatagcttaag |
13552007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University