View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0442_high_3 (Length: 292)
Name: NF0442_high_3
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 39296332 - 39296082
Alignment:
| Q |
13 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagag |
112 |
Q |
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| T |
39296332 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagag |
39296233 |
T |
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| Q |
113 |
aataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
212 |
Q |
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| T |
39296232 |
aatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
39296133 |
T |
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| Q |
213 |
acaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
263 |
Q |
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| T |
39296132 |
acaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
39296082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 39289449 - 39289199
Alignment:
| Q |
16 |
agcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagag |
112 |
Q |
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| T |
39289449 |
agcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagag |
39289350 |
T |
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| Q |
113 |
aataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
212 |
Q |
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| T |
39289349 |
aataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaac |
39289250 |
T |
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| Q |
213 |
acaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
263 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289249 |
acaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
39289199 |
T |
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