View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0442_high_9 (Length: 255)
Name: NF0442_high_9
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 11869431 - 11869598
Alignment:
| Q |
1 |
catcgttagttgcggcaagcaataactatattccagatcaataatttaaaaccatactgattaagatttgtgttcttctacgtttgttgtatatagattc |
100 |
Q |
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| T |
11869431 |
catccttagttgcggcaagcaattactatattccagatcaataatttaaaaccatactgattaagatttgtgttcttctacgtttattgtatatagattc |
11869530 |
T |
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| Q |
101 |
ggtttatcttttttgtacatgttattttgtgttcattttgatatttccatttatgtgaatgatgatgt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11869531 |
ggtttatcttttttgtacatgttattttgtgttcattttgatatttccatttatgtgaatgatgatgt |
11869598 |
T |
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